RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MORF4L2Q15014 288 aa14.11□□□□□ -0.15
NUP54-216ENST00000514901 GPRC6AQ5T6X5 926 aa14.11□□□□□ -0.15
NUP54-216ENST00000514901 KCTD16Q68DU8 428 aa14.11□□□□□ -0.15
NUP54-216ENST00000514901 PSAPL1Q6NUJ1 521 aa14.11□□□□□ -0.15
NUP54-216ENST00000514901 ZNF534Q76KX8 674 aa14.11□□□□□ -0.15
NUP54-216ENST00000514901 MARK2Q7KZI7 788 aaKnown RBP14.11□□□□□ -0.15
NUP54-216ENST00000514901 CAND1Q86VP6 1230 aaKnown RBP14.11□□□□□ -0.15
NUP54-216ENST00000514901 BBOF1Q8ND07 529 aa14.11□□□□□ -0.15
NUP54-216ENST00000514901 MNS1Q8NEH6 495 aa14.11□□□□□ -0.15
NUP54-216ENST00000514901 SGSM3Q96HU1 749 aa14.11□□□□□ -0.15
NUP54-216ENST00000514901 CNDP2Q96KP4 475 aaKnown RBP14.11□□□□□ -0.15
NUP54-216ENST00000514901 TTC1Q99614 292 aa14.11□□□□□ -0.15
NUP54-216ENST00000514901 KIFC1Q9BW19 673 aa14.11□□□□□ -0.15
NUP54-216ENST00000514901 ARHGEF17Q96PE2 2063 aaPredicted RBP14.1□□□□□ -0.15
NUP54-216ENST00000514901 DCHS1Q96JQ0 3298 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 CFAP99D6REC4 459 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 KMOO15229 486 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 KCNJ13O60928 360 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 TMEM63AO94886 807 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 CDK4P11802 303 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 CKMT2P17540 419 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 MSH3P20585 1137 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 IVDP26440 423 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 MGAT1P26572 445 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 PRAMEP78395 509 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 DEFB133Q30KQ1 61 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 PROX2Q3B8N5 592 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 ZRANB3Q5FWF4 1079 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 PPM1JQ5JR12 505 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 C6orf132Q5T0Z8 1188 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 LYPLAL1Q5VWZ2 237 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 IZUMO3Q5VZ72 239 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 LRRTM4Q86VH4 590 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 NXPE1Q8N323 547 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 OR13J1Q8NGT2 312 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 HDAC10Q969S8 669 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.1□□□□□ -0.15
NUP54-216ENST00000514901 DCUN1D1Q96GG9 259 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 SNF8Q96H20 258 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 ZNF514Q96K75 400 aaPredicted RBP14.1□□□□□ -0.15
NUP54-216ENST00000514901 SERPINB12Q96P63 405 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 BOCQ9BWV1 1114 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 ARFGAP3Q9NP61 516 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 CHRAC1Q9NRG0 131 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 SAMD15Q9P1V8 674 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 SOX13Q9UN79 622 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 GPR34Q9UPC5 381 aa14.1□□□□□ -0.15
NUP54-216ENST00000514901 DNMT3AQ9Y6K1 912 aaPredicted RBP14.1□□□□□ -0.15
NUP54-216ENST00000514901 LRP4O75096 1905 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 COL5A1P20908 1838 aaPredicted RBP14.09□□□□□ -0.15
NUP54-216ENST00000514901 TRBV5-4A0A0C4DH59 114 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 CCDC162PA2VCL2 907 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 KLHL33A6NCF5 533 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 EFCAB8A8MWE9 144 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 AVILO75366 819 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 CKMT1AP12532 417 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 AKT1P31749 480 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 PPARGP37231 505 aaPredicted RBP14.09□□□□□ -0.15
NUP54-216ENST00000514901 MAGEA3P43357 314 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 CLCNKAP51800 687 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 SIM1P81133 766 aaPredicted RBP14.09□□□□□ -0.15
NUP54-216ENST00000514901 CTBSQ01459 385 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 C2orf54Q08AI8 447 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 ILKQ13418 452 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 KCTD19Q17RG1 926 aaPredicted RBP14.09□□□□□ -0.15
NUP54-216ENST00000514901 DNAJC21Q5F1R6 531 aaKnown RBP14.09□□□□□ -0.15
NUP54-216ENST00000514901 ZNF648Q5T619 568 aaPredicted RBP14.09□□□□□ -0.15
NUP54-216ENST00000514901 CASC4Q6P4E1 433 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 AFTPHQ6ULP2 937 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 CERS6Q6ZMG9 384 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 TAS2R42Q7RTR8 314 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 FAM46DQ8NEK8 389 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 OR6P1Q8NGX9 317 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 APOLD1Q96LR9 279 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 COPS8Q99627 209 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 ERP44Q9BS26 406 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 SUDS3Q9H7L9 328 aaPredicted RBP14.09□□□□□ -0.15
NUP54-216ENST00000514901 CAAP1Q9H8G2 361 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 TREX1Q9NSU2 369 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 SYBUQ9NX95 663 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 ZDHHC3Q9NYG2 299 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 APOBEC2Q9Y235 224 aaKnown RBP14.09□□□□□ -0.15
NUP54-216ENST00000514901 PCDHGA1Q9Y5H4 931 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 MRFAP1Q9Y605 127 aa14.09□□□□□ -0.15
NUP54-216ENST00000514901 ZNF106Q9H2Y7 1883 aaKnown RBP14.08□□□□□ -0.16
NUP54-216ENST00000514901 FAM237BA0A1B0GVD1 139 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 CCDC78A2IDD5 438 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 GOLGA8MH3BSY2 632 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 CCL22O00626 93 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 GIPC1O14908 333 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 MTX2O75431 263 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 CELA2BP08218 269 aaPredicted RBP14.08□□□□□ -0.16
NUP54-216ENST00000514901 VCLP18206 1134 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 PAMP19021 973 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 ACP1P24666 158 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 ACRV1P26436 265 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 ARSDP51689 593 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 CRADDP78560 199 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 DAB2P98082 770 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 NR0B2Q15466 257 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms