RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 MED22Q15528 200 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 CYP20A1Q6UW02 462 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 CAND1Q86VP6 1230 aaKnown RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 TREML1Q86YW5 311 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 ARMC8Q8IUR7 673 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 SIDT2Q8NBJ9 832 aaKnown RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 OR9I1Q8NGQ6 314 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 BRSK1Q8TDC3 778 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 UPF1Q92900 1129 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP53-209ENST00000514665 CENPNQ96H22 339 aaPredicted RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 GMLQ99445 158 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 KRCC1Q9NPI7 259 aaPredicted RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 GTF2IRD1Q9UHL9 959 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 FCF1Q9Y324 198 aaKnown RBP12.59□□□□□ -0.39
USP53-209ENST00000514665 KIF13AQ9H1H9 1805 aa12.59□□□□□ -0.39
USP53-209ENST00000514665 ELOVL7A1L3X0 281 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 INSIG1O15503 277 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 TRBC1P01850 177 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 GGT5P36269 586 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 WNT7BP56706 349 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 MTPNP58546 118 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 PPP1R8Q12972 351 aaKnown RBP12.58□□□□□ -0.39
USP53-209ENST00000514665 NAE1Q13564 534 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 LPIN1Q14693 890 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 CCL14Q16627 93 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 RBM20Q5T481 1227 aaKnown RBP12.58□□□□□ -0.39
USP53-209ENST00000514665 SLC9A4Q6AI14 798 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 DSG4Q86SJ6 1040 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 ZC3HC1Q86WB0 502 aaKnown RBP12.58□□□□□ -0.39
USP53-209ENST00000514665 WDTC1Q8N5D0 677 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 CLP1Q92989 425 aaKnown RBP12.58□□□□□ -0.39
USP53-209ENST00000514665 TPK1Q9H3S4 243 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 GALNT8Q9NY28 637 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 ZDHHC2Q9UIJ5 367 aa12.58□□□□□ -0.39
USP53-209ENST00000514665 MRPS23Q9Y3D9 190 aaKnown RBP12.58□□□□□ -0.39
USP53-209ENST00000514665 TP73O15350 636 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 RGS20O76081 388 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 CDK14O94921 469 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 RPN2P04844 631 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 SLC6A2P23975 617 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 RFX4Q33E94 735 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 PLEKHG4Q58EX7 1191 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 CWF19L1Q69YN2 538 aaKnown RBP12.58□□□□□ -0.4
USP53-209ENST00000514665 CERS6Q6ZMG9 384 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 OSTM1Q86WC4 334 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 CANT1Q8WVQ1 401 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 ADI1Q9BV57 179 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 SERHL2Q9H4I8 314 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 SERHLQ9NQF3 203 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 MYH7P12883 1935 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 OR2AG2A6NM03 316 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 PDLIM1O00151 329 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 NIPSNAP2O75323 286 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 DLDP09622 509 aaKnown RBP12.58□□□□□ -0.4
USP53-209ENST00000514665 THRBP10828 461 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 MTHFD1P11586 935 aaKnown RBP12.58□□□□□ -0.4
USP53-209ENST00000514665 PRKCHP24723 683 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 ATXN7L2Q5T6C5 722 aaPredicted RBP12.58□□□□□ -0.4
USP53-209ENST00000514665 FUT10Q6P4F1 479 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 ANKRD23Q86SG2 305 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 ZDHHC14Q8IZN3 488 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 MAGEB10Q96LZ2 347 aaPredicted RBP12.58□□□□□ -0.4
USP53-209ENST00000514665 PCYT2Q99447 389 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 TRMT13Q9NUP7 481 aaKnown RBP12.58□□□□□ -0.4
USP53-209ENST00000514665 PARP4Q9UKK3 1724 aaKnown RBP12.58□□□□□ -0.4
USP53-209ENST00000514665 A0A1B0GVM2 712 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 TCAF2A6NFQ2 919 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 ENPP3O14638 875 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 UROSP10746 265 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 CCNFP41002 786 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 CCR10P46092 362 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 IL10RBQ08334 325 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 DLG1Q12959 904 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 NUMA1Q14980 2115 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 SPRED3Q2MJR0 410 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 FAM174BQ3ZCQ3 159 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 USP39Q53GS9 565 aaKnown RBP12.58□□□□□ -0.4
USP53-209ENST00000514665 CCDC149Q6ZUS6 474 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 CHID1Q9BWS9 393 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 MAGEH1Q9H213 219 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 ATXN10Q9UBB4 475 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 PCDHB1Q9Y5F3 818 aa12.58□□□□□ -0.4
USP53-209ENST00000514665 A8MT66 165 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 NEDD8-MDP1E9PL57 170 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 EIF2S1P05198 315 aaKnown RBP12.57□□□□□ -0.4
USP53-209ENST00000514665 TNNI3P19429 210 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 GMPRP36959 345 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 PGGT1BP53609 377 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 RAB6CQ53S08 254 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 CPTPQ5TA50 214 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 CDCA2Q69YH5 1023 aaPredicted RBP12.57□□□□□ -0.4
USP53-209ENST00000514665 THAP5Q7Z6K1 395 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 TMPRSS11BQ86T26 416 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 SERPINA9Q86WD7 417 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 PLD6Q8N2A8 252 aaKnown RBP12.57□□□□□ -0.4
USP53-209ENST00000514665 FAM81AQ8TBF8 368 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 QRFPRQ96P65 431 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 CDK15Q96Q40 435 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 RAB6CQ9H0N0 254 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 PNPLA8Q9NP80 782 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms