RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 TCTN2Q96GX1 697 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 ING2Q9H160 280 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 UCK1Q9HA47 277 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 MLXIPLQ9NP71 852 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 SLC23A2Q9UGH3 650 aa20.02■□□□□ 0.8
SQSTM1-215ENST00000514093 TMEM191CA6NGB0 347 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 LRCH4O75427 683 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 XRCC1P18887 633 aaPredicted RBP20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 IL1R2P27930 398 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 PTPN4P29074 926 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 CDH6P55285 790 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 DSC2Q02487 901 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 IL10RAQ13651 578 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 UGT8Q16880 541 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 PLEKHA7Q6IQ23 1121 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 PWWP2BQ6NUJ5 590 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 IRGCQ6NXR0 463 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 JMJD6Q6NYC1 403 aaPredicted RBP20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 POLNQ7Z5Q5 900 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 PSTKQ8IV42 348 aaKnown RBP20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 Q8NA96 180 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 AVL9Q8NBF6 648 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 THAP4Q8WY91 577 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 HSPH1Q92598 858 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 OR2AG1Q9H205 316 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 FAM83DQ9H4H8 585 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 ERRFI1Q9UJM3 462 aaPredicted RBP20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 SRPK3Q9UPE1 567 aa20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 PCDHGA9Q9Y5G4 932 aaKnown RBP20.01■□□□□ 0.79
SQSTM1-215ENST00000514093 TCF4P15884 667 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 ARL4AP40617 200 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 SPINT3P49223 89 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 ZNF135P52742 658 aaPredicted RBP20■□□□□ 0.79
SQSTM1-215ENST00000514093 PPP1CAP62136 330 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 KCNAB1Q14722 419 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 TDRD12Q587J7 1177 aaKnown RBP20■□□□□ 0.79
SQSTM1-215ENST00000514093 HENMT1Q5T8I9 393 aaKnown RBP20■□□□□ 0.79
SQSTM1-215ENST00000514093 CRTC3Q6UUV7 619 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 PRSS42Q7Z5A4 293 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 SRRM1Q8IYB3 904 aaKnown RBP20■□□□□ 0.79
SQSTM1-215ENST00000514093 AOPEPQ8N6M6 819 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 LPCAT1Q8NF37 534 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 KLHL6Q8WZ60 621 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 C19orf60Q96EN9 201 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 CSPG4P5Q96PW8 444 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 CARD9Q9H257 536 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 CLSTN2Q9H4D0 955 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 SLAMF7Q9NQ25 335 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 DTLQ9NZJ0 730 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 DNAJC16Q9Y2G8 782 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 HIVEP3Q5T1R4 2406 aa20■□□□□ 0.79
SQSTM1-215ENST00000514093 C1orf232A0A0U1RR37 186 aa19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 KRT86O43790 486 aa19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 PRLP01236 227 aa19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 FOLR1P15328 257 aa19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 NELFEP18615 380 aaKnown RBP19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 TEX26Q8N6G2 289 aa19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 GPR87Q9BY21 358 aa19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 POLR1EQ9GZS1 481 aaKnown RBP19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 PDE7BQ9NP56 450 aa19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 RARRES3Q9UL19 164 aa19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 TTLL3Q9Y4R7 772 aa19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 ADGRG1Q9Y653 693 aa19.99■□□□□ 0.79
SQSTM1-215ENST00000514093 IGHV5-51A0A0C4DH38 117 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 WIPF3A6NGB9 483 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 OR52A4PA6NMU1 304 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 PDZK1P1A8MUH7 402 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 LDLRP01130 860 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 TPM2P07951 284 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 RPL10P27635 214 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 PTGIRP43119 386 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 CAPZBP47756 277 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 CLCNKAP51800 687 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 RPS15P62841 145 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 TUBB3Q13509 450 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 GPR18Q14330 331 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 BECN1Q14457 450 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 CHRNA6Q15825 494 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 DPYSL2Q16555 572 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 INSCQ1MX18 579 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 CDKAL1Q5VV42 579 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 PAPD7Q5XG87 772 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 CERS6Q6ZMG9 384 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 SYVN1Q86TM6 617 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 ZDHHC12Q96GR4 267 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 TDRD1Q9BXT4 1180 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 SLC29A3Q9BZD2 475 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 TRIM10Q9UDY6 481 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 ZNF451Q9Y4E5 1061 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 CSMD1Q96PZ7 3565 aa19.98■□□□□ 0.79
SQSTM1-215ENST00000514093 BRAFP15056 766 aa19.97■□□□□ 0.79
SQSTM1-215ENST00000514093 TNFRSF8P28908 595 aa19.97■□□□□ 0.79
SQSTM1-215ENST00000514093 DRG2P55039 364 aaKnown RBP19.97■□□□□ 0.79
SQSTM1-215ENST00000514093 LAMB3Q13751 1172 aa19.97■□□□□ 0.79
SQSTM1-215ENST00000514093 ALS2CLQ60I27 953 aa19.97■□□□□ 0.79
SQSTM1-215ENST00000514093 TXNRD3NBQ6F5E7 133 aa19.97■□□□□ 0.79
SQSTM1-215ENST00000514093 ADGRG6Q86SQ4 1221 aa19.97■□□□□ 0.79
SQSTM1-215ENST00000514093 TICAM1Q8IUC6 712 aa19.97■□□□□ 0.79
SQSTM1-215ENST00000514093 SIDT2Q8NBJ9 832 aaKnown RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms