RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 TMEM79Q9BSE2 394 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 FAM96AQ9H5X1 160 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 BCAP29Q9UHQ4 241 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 AURKCQ9UQB9 309 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 TBC1D30Q9Y2I9 924 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 AAR2Q9Y312 384 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 DGKBQ9Y6T7 804 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 OR51F1A6NGY5 319 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 FAM58BPP0C7Q3 252 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 PABPC4LP0CB38 370 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 FCARP24071 287 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 ADSLP30566 484 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 PGGT1BP53609 377 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 CDK18Q07002 472 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 FOXD4Q12950 439 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 NR1D2Q14995 579 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 CYP2A13Q16696 494 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 MTSS1LQ765P7 747 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 SNX31Q8N9S9 440 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 MOCOSQ96EN8 888 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 WRAP53Q9BUR4 548 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 S100A14Q9HCY8 104 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 DYRK4Q9NR20 520 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 C20orf96Q9NUD7 363 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 SLC2A6Q9UGQ3 507 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 ERVW-1Q9UQF0 538 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 PRELID1Q9Y255 219 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 ARL5AQ9Y689 179 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 ANKRD12Q6UB98 2062 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 SCAMP1O15126 338 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 KRT38O76015 456 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 VAPBO95292 243 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 HOXC13P31276 330 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 HTR7P34969 479 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 SERPINH1P50454 418 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 METAP1P53582 386 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 COPAP53621 1224 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 TPD52P55327 224 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 SNRPD1P62314 119 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 C22orf39Q6P5X5 142 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 TRMT10BQ6PF06 316 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 TAS2R42Q7RTR8 314 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 AHI1Q8N157 1196 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 CPXM2Q8N436 756 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 SLC44A3Q8N4M1 653 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 NAT8LQ8N9F0 302 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 TERB1Q8NA31 727 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 CYGBQ8WWM9 190 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 DHRS1Q96LJ7 313 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 P2RY13Q9BPV8 354 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 TXLNGYQ9BZA5 131 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 RABL2BQ9UNT1 228 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 INVSQ9Y283 1065 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 WDR37Q9Y2I8 494 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 ST14Q9Y5Y6 855 aa8.63□□□□□ -1.03
LIMCH1-209ENST00000509277 UBA6A0AVT1 1052 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 SAC3D1A6NKF1 404 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 PSMD11O00231 422 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 GPR39O43194 453 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 DLDP09622 509 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 YAP1P46937 504 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 ZNF234Q14588 700 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 ARMC12Q5T9G4 340 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 NUDT18Q6ZVK8 323 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 RTL10Q7L3V2 364 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 SLC15A3Q8IY34 581 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 NDUFAF2Q8N183 169 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 METTL25Q8N6Q8 603 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 EIF1ADQ8N9N8 165 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 TSPAN14Q8NG11 270 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 E2F7Q96AV8 911 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 FAM83CQ9BQN1 747 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 PHF7Q9BWX1 381 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 CCDC90BQ9GZT6 254 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 WWP1Q9H0M0 922 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 SLC25A51Q9H1U9 297 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 LRRC40Q9H9A6 602 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 TRIM39Q9HCM9 518 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 SARS2Q9NP81 518 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 POLE4Q9NR33 117 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 RSL24D1Q9UHA3 163 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 TAGLN3Q9UI15 199 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 SOX13Q9UN79 622 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 ITM2BQ9Y287 266 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 DNAJC16Q9Y2G8 782 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 RNF103-CHMP3A0A140T963 221 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 A0A1W2PPW3 197 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 SDR42E2A6NKP2 422 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 MAN1A2O60476 641 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 PCDH8O95206 1070 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 PENKP01210 267 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 TFAP2AP05549 437 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 GLT6D1Q7Z4J2 308 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 ZCCHC9Q8N567 271 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 TXNDC5Q8NBS9 432 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 AZIN2Q96A70 460 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 VAT1Q99536 393 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 IL12RB2Q99665 862 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 TUBB6Q9BUF5 446 aa8.62□□□□□ -1.03
LIMCH1-209ENST00000509277 MIR1-1HGQ9H1L0 117 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms