RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 DAGLAQ9Y4D2 1042 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 FAM237AA0A1B0GTK4 181 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 IFNA17P01571 189 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 YBX3P16989 372 aaKnown RBP eCLIP11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF3P17036 446 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 TPSB2P20231 275 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 BUD31P41223 144 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 AQP4P55087 323 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 CREMQ03060 361 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 NFE2L1Q14494 772 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 TPSAB1Q15661 275 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 ZDHHC20Q5W0Z9 365 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF280DQ6N043 979 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 ITIH5Q86UX2 942 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 UNC93AQ86WB7 457 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 KLHL36Q8N4N3 616 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 GIMAP5Q96F15 307 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 C8orf48Q96LL4 319 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 OR5B12Q96R08 314 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 CHIAQ9BZP6 476 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 ZYG11BQ9C0D3 744 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 RGCCQ9H4X1 137 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 EXO5Q9H790 373 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 FAM205AQ6ZU69 1335 aa11.16□□□□□ -0.62
LIMCH1-208ENST00000508501 FXYD6-FXYD2A0A087WZ82 144 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SH3PXD2BA1X283 911 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SULT1C2O00338 296 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SLC33A1O00400 549 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 THEGLP0DJG4 465 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 MATN1P21941 496 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 CD83Q01151 205 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 QPCTQ16769 361 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 AP5B1Q2VPB7 878 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 ABCA11PQ4W5N1 156 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 FAM91A1Q658Y4 838 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 CXorf57Q6NSI4 855 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 TMEM161BQ8NDZ6 487 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 FNDC8Q8TC99 324 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 TLCD1Q96CP7 247 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 HSFY1Q96LI6 401 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 HYLS1Q96M11 299 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 NPAS2Q99743 824 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SLC39A3Q9BRY0 314 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 FUZQ9BT04 418 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 TTLL2Q9BWV7 592 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 FXYD6Q9H0Q3 95 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SLA2Q9H6Q3 261 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SYNDIG1Q9H7V2 258 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 FOLH1BQ9HBA9 442 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF334Q9HCZ1 680 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 ATP13A1Q9HD20 1204 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SNTG1Q9NSN8 517 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 ABI2Q9NYB9 513 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 N6AMT1Q9Y5N5 214 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 TSTD3H0UI37 97 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 GPR182O15218 404 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SLC19A2O60779 497 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 MBL2P11226 248 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 MAPK3P27361 379 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 IFI44LQ53G44 452 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 TATDN1Q6P1N9 297 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF280BQ86YH2 543 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SPATA22Q8NHS9 363 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 TIFAQ96CG3 184 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 PNMA5Q96PV4 448 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 POFUT2Q9Y2G5 429 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 OR10H1Q9Y4A9 318 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 PCDHGA11Q9Y5H2 935 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 NPHS1O60500 1241 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 CYP11A1P05108 521 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 GSTM3P21266 225 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 LHCGRP22888 699 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 GBX2P52951 348 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SLC3A1Q07837 685 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 FOXM1Q08050 763 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 COLEC12Q5KU26 742 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 CIR1Q86X95 450 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 OR4A15Q8NGL6 344 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 C1orf216Q8TAB5 229 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SGCDQ92629 289 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 MSANTD3Q96H12 275 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 RNF157Q96PX1 679 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 BCL7BQ9BQE9 202 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 CDADC1Q9BWV3 514 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 TNKS2Q9H2K2 1166 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SAV1Q9H4B6 383 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 USP29Q9HBJ7 922 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 SCP2D1Q9UJQ7 156 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 VWA7Q9Y334 891 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF780BQ9Y6R6 833 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 TCRBV9S1A1TA0A576 114 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 CBX4O00257 560 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 DNM1LO00429 736 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 IFNA4P05014 189 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 NELFEP18615 380 aaKnown RBP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 PBLDP30039 288 aaPredicted RBP11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 CHRNA5P30532 468 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 TUBP50607 506 aa11.15□□□□□ -0.62
LIMCH1-208ENST00000508501 ZNF143P52747 638 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms