RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 HSP90AA5PQ58FG0 334 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 LDLRAP1Q5SW96 308 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 DET1Q7L5Y6 550 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 PARGQ86W56 976 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 RBFAQ8N0V3 343 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 DDHD1Q8NEL9 900 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.78□□□□□ -0.528e-7■■■■■ 56.2
CUX1-210ENST00000497815 CCDC97Q96F63 343 aaPredicted RBP11.78□□□□□ -0.52
CUX1-210ENST00000497815 DCUN1D1Q96GG9 259 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 TTC25Q96NG3 672 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 GAREM1Q9H706 876 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 CARS2Q9HA77 564 aaKnown RBP11.78□□□□□ -0.52
CUX1-210ENST00000497815 IL21RQ9HBE5 538 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 TRIM39Q9HCM9 518 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 CYP4F12Q9HCS2 524 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 PARD6AQ9NPB6 346 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 SMOXQ9NWM0 555 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 ATXN10Q9UBB4 475 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 PNMA8BQ9ULN7 279 aaPredicted RBP11.78□□□□□ -0.52
CUX1-210ENST00000497815 USP34Q70CQ2 3546 aa11.78□□□□□ -0.52
CUX1-210ENST00000497815 ZNF106Q9H2Y7 1883 aaKnown RBP11.77□□□□□ -0.53
CUX1-210ENST00000497815 TRBV5-4A0A0C4DH59 114 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 LNP1A1A4G5 178 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 PRSS38A1L453 326 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 AGAP14A8MT82 685 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 SDC3O75056 442 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 CDK14O94921 469 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 RASGRP1O95267 797 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 FUCA1P04066 466 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 FAM153BP0C7A2 387 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 ZNF8P17098 575 aaPredicted RBP11.77□□□□□ -0.53
CUX1-210ENST00000497815 ACRV1P26436 265 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 PMLP29590 882 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 PPARDQ03181 441 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 TMEM115Q12893 351 aaPredicted RBP11.77□□□□□ -0.53
CUX1-210ENST00000497815 GTF2H3Q13889 308 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 CSRP2Q16527 193 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 FAM153CQ494X1 144 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 AARS2Q5JTZ9 985 aaKnown RBP11.77□□□□□ -0.53
CUX1-210ENST00000497815 STEAP4Q687X5 459 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 ZNF470Q6ECI4 717 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 MRNIPQ6NTE8 343 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 NEPROQ6NW34 567 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 TRMT10BQ6PF06 316 aaKnown RBP11.77□□□□□ -0.53
CUX1-210ENST00000497815 CRTC3Q6UUV7 619 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 CEP128Q6ZU80 1094 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 ADGRG6Q86SQ4 1221 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 SDCCAG8Q86SQ7 713 aaPredicted RBP11.77□□□□□ -0.53
CUX1-210ENST00000497815 KCNMB4Q86W47 210 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 PHACTR4Q8IZ21 702 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 RASGEF1AQ8N9B8 481 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 GSDMBQ8TAX9 411 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 CERS2Q96G23 380 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 COPS8Q99627 209 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 BOCQ9BWV1 1114 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 ZCCHC2Q9C0B9 1178 aaKnown RBP11.77□□□□□ -0.53
CUX1-210ENST00000497815 PHACTR1Q9C0D0 580 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 TCEAL2Q9H3H9 227 aaPredicted RBP11.77□□□□□ -0.53
CUX1-210ENST00000497815 VPS37BQ9H9H4 285 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 IARS2Q9NSE4 1012 aaKnown RBP11.77□□□□□ -0.53
CUX1-210ENST00000497815 ZDHHC3Q9NYG2 299 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 SLC17A6Q9P2U8 582 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 ZNHIT2Q9UHR6 403 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 KLF15Q9UIH9 416 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 SUFUQ9UMX1 484 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 SLC17A4Q9Y2C5 497 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 GPSM3Q9Y4H4 160 aa11.77□□□□□ -0.53
CUX1-210ENST00000497815 OR2AG2A6NM03 316 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 CFAP99D6REC4 459 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 VEGFDO43915 354 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 OR1I1O60431 355 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 NDUFS3O75489 264 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 TNFP01375 233 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 RALBP11234 206 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 JUNDP17535 347 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 GPX6P59796 221 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 VSNL1P62760 191 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 B4GALNT1Q00973 533 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 CBLBQ13191 982 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 CTBP1Q13363 440 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 KYNUQ16719 465 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 ZNF423Q2M1K9 1284 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 PLA2G4EQ3MJ16 856 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 AASDHQ4L235 1098 aaPredicted RBP11.76□□□□□ -0.53
CUX1-210ENST00000497815 UBAP2Q5T6F2 1119 aaKnown RBP11.76□□□□□ -0.53
CUX1-210ENST00000497815 IL27RAQ6UWB1 636 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 CCNI2Q6ZMN8 369 aaPredicted RBP11.76□□□□□ -0.53
CUX1-210ENST00000497815 C3orf62Q6ZUJ4 267 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 TRAPPC5Q8IUR0 188 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 DENND6AQ8IWF6 608 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 MINDY1Q8N5J2 469 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 SGF29Q96ES7 293 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 SGSM3Q96HU1 749 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 ELF4Q99607 663 aaPredicted RBP11.76□□□□□ -0.53
CUX1-210ENST00000497815 TTC1Q99614 292 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 FAM167BQ9BTA0 163 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 EDEM2Q9BV94 578 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 SLC13A1Q9BZW2 595 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 ZDHHC5Q9C0B5 715 aa11.76□□□□□ -0.53
CUX1-210ENST00000497815 TSPYL1Q9H0U9 437 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms