RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	GFPT1	Q06210	699 aa	Predicted RBP	4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	ATP1A4	Q13733	1029 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	ALCAM	Q13740	583 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	NFYC	Q13952	458 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	MEA1	Q16626	185 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	DUOXA1	Q1HG43	343 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	KIAA1614	Q5VZ46	1190 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	LYSMD4	Q5XG99	296 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	ICE2	Q659A1	982 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	ABLIM2	Q6H8Q1	611 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	VSTM1	Q6UX27	236 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	DBX2	Q6ZNG2	339 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	MED25	Q71SY5	747 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	LPCAT2	Q7L5N7	544 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	GPRIN1	Q7Z2K8	1008 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	TTC30A	Q86WT1	665 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	ERICH1	Q86X53	443 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	ZSWIM9	Q86XI8	627 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	XYLT1	Q86Y38	959 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	SPATA2L	Q8IUW3	424 aa	Predicted RBP	4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	WDR49	Q8IV35	697 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	THEM5	Q8N1Q8	247 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	TERB1	Q8NA31	727 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	FNIP1	Q8TF40	1166 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	UCMA	Q8WVF2	138 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	WBP2	Q969T9	261 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	ZUFSP	Q96AP4	578 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	WBP1	Q96G27	269 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	NAF1	Q96HR8	494 aa	Known RBP	4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	CEP295NL	Q96MC4	621 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	C7orf26	Q96N11	449 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	TRAPPC9	Q96Q05	1148 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	TREX2	Q9BQ50	279 aa	Predicted RBP	4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	MRPL45	Q9BRJ2	306 aa	Known RBP	4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	GPR63	Q9BZJ6	419 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	ELOVL4	Q9GZR5	314 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	PAIP1	Q9H074	479 aa	Known RBP	4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	MRPL44	Q9H9J2	332 aa	Known RBP	4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	ZBTB26	Q9HCK0	441 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	OLA1	Q9NTK5	396 aa	Known RBP	4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	INTS13	Q9NVM9	706 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	SMPD4	Q9NXE4	827 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	TBC1D7	Q9P0N9	293 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	HMGXB4	Q9UGU5	601 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	VPS51	Q9UID3	782 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	CDH9	Q9ULB4	789 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	HPSE	Q9Y251	543 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	KIF3A	Q9Y496	699 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	CPQ	Q9Y646	472 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	CLIC4	Q9Y696	253 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	PLXNA2	O75051	1894 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	UBE4B	O95155	1302 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	CACNA1D	Q01668	2161 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	CSMD2	Q7Z408	3487 aa		4.4	□□□□□ -1.71
VPS52-222	ENST00000495981	CRYBG3	Q68DQ2	2970 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	IGHV1OR15-9	A0A0B4J2B8	117 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	TCRBV21S2A2	A0A5A6	115 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	PGPEP1L	A6NFU8	196 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	FAM90A20P	A6NIJ5	464 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981		B5MCH6	92 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981		H3BQV1	296 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	CLDN5	O00501	218 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	TRIM24	O15164	1050 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	EIF3D	O15371	548 aa	Known RBP eCLIP	4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	TGFB1I1	O43294	461 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	HOXA3	O43365	443 aa	Predicted RBP	4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	COCH	O43405	550 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	CACNG3	O60359	315 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	DOK2	O60496	412 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	HUS1	O60921	280 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	TACC1	O75410	805 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	KAT7	O95251	611 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	KLF8	O95600	359 aa	Predicted RBP	4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	KRT19	P08727	400 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	TMEM191B	P0C7N4	346 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	ZDHHC11B	P0C7U3	371 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	HLA-E	P13747	358 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	GABRG2	P18507	467 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	ITGB6	P18564	788 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	LHX1	P48742	406 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	PDE6C	P51160	858 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	ZNF134	P52741	427 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	ALDH18A1	P54886	795 aa	Known RBP	4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	MRPS21	P82921	87 aa	Known RBP	4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	CYP24A1	Q07973	514 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	GRIK2	Q13002	908 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	SLC14A1	Q13336	389 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	CUL4A	Q13619	759 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	HNRNPD	Q14103	355 aa	Known RBP	4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	USP10	Q14694	798 aa	Known RBP	4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	PSMD6	Q15008	389 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	TST	Q16762	297 aa	Known RBP	4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	RNF151	Q2KHN1	245 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	VWA3B	Q502W6	1294 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	MDH1B	Q5I0G3	518 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	SNX30	Q5VWJ9	437 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	ITPRIPL1	Q6GPH6	555 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	ACAD10	Q6JQN1	1059 aa		4.39	□□□□□ -1.71
VPS52-222	ENST00000495981	FAM173B	Q6P4H8	233 aa		4.39	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms