RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 CIB1Q99828 191 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 CLSTN3Q9BQT9 956 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 GPATCH1Q9BRR8 931 aaKnown RBP11.11□□□□□ -0.63
CHMP3-209ENST00000494623 EFHD1Q9BUP0 239 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 VN1R3Q9BXE9 311 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 KLF16Q9BXK1 252 aaPredicted RBP11.11□□□□□ -0.63
CHMP3-209ENST00000494623 TRIM4Q9C037 500 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 SDR39U1Q9NRG7 319 aaPredicted RBP11.11□□□□□ -0.63
CHMP3-209ENST00000494623 ZNF225Q9UK10 706 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 VPS9D1Q9Y2B5 631 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 GIPC1O14908 333 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 AKAP10O43572 662 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 SMIM18P0DKX4 95 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 IDO1P14902 403 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 ATP6V1B2P21281 511 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 CASP2P42575 452 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 HSPA13P48723 471 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 RHOAP61586 193 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 HMBOX1Q6NT76 420 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 IFNEQ86WN2 208 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 LRRC43Q8N309 656 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 OR6K2Q8NGY2 324 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 RIN3Q8TB24 985 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 DNAJB14Q8TBM8 379 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 OVCA2Q8WZ82 227 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 LRRC58Q96CX6 371 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 PRPF18Q99633 342 aaKnown RBP11.11□□□□□ -0.63
CHMP3-209ENST00000494623 C1orf50Q9BV19 199 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 GPR63Q9BZJ6 419 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 GID8Q9NWU2 228 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 CMTM6Q9NX76 183 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 EIF2B4Q9UI10 523 aaKnown RBP11.11□□□□□ -0.63
CHMP3-209ENST00000494623 PCTPQ9UKL6 214 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 CNOT6Q9ULM6 557 aaKnown RBP11.11□□□□□ -0.63
CHMP3-209ENST00000494623 GPR45Q9Y5Y3 372 aa11.11□□□□□ -0.63
CHMP3-209ENST00000494623 CASP8AP2Q9UKL3 1982 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 ANKRD12Q6UB98 2062 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 STX16O14662 325 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 BAIAP3O94812 1187 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 OR4F21O95013 312 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 ESRRBO95718 433 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 CLPTM1O96005 669 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 CHEK2O96017 543 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 CYBBP04839 570 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 ALPIP09923 528 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 FAM58BPP0C7Q3 252 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 PABPC4LP0CB38 370 aaKnown RBP11.1□□□□□ -0.63
CHMP3-209ENST00000494623 MBL2P11226 248 aaPredicted RBP11.1□□□□□ -0.63
CHMP3-209ENST00000494623 CKMT2P17540 419 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 ITGB6P18564 788 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 UFM1P61960 85 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 NOGQ13253 232 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 IKBKEQ14164 716 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 C18orf21Q32NC0 220 aaPredicted RBP11.1□□□□□ -0.63
CHMP3-209ENST00000494623 FUT11Q495W5 492 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 HABP4Q5JVS0 413 aaKnown RBP11.1□□□□□ -0.63
CHMP3-209ENST00000494623 SPOUT1Q5T280 376 aaKnown RBP11.1□□□□□ -0.63
CHMP3-209ENST00000494623 TXNDC11Q6PKC3 985 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 BLOC1S3Q6QNY0 202 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.1□□□□□ -0.63
CHMP3-209ENST00000494623 MYO1HQ8N1T3 1032 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 TTC30BQ8N4P2 665 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 PAF1Q8N7H5 531 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 CDYL2Q8N8U2 506 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 OR2T34Q8NGX1 318 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 OR2T3Q8NH03 318 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 ZNF461Q8TAF7 563 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 PXYLP1Q8TE99 480 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 AFF4Q9UHB7 1163 aaKnown RBP11.1□□□□□ -0.63
CHMP3-209ENST00000494623 CNOT11Q9UKZ1 510 aaKnown RBP11.1□□□□□ -0.63
CHMP3-209ENST00000494623 K7ERQ8 282 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 VPS4BO75351 444 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 MATN4O95460 622 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 MLYCDO95822 493 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 UROSP10746 265 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 SLC6A2P23975 617 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 SMAD3P84022 425 aaKnown RBP11.1□□□□□ -0.63
CHMP3-209ENST00000494623 NFYCQ13952 458 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 SPATA19Q7Z5L4 167 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 MINDY1Q8N5J2 469 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 OR56A4Q8NGH8 313 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 RNF217Q8TC41 542 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 FEM1AQ9BSK4 669 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 TM6SF2Q9BZW4 377 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 CWH43Q9H720 699 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 PKP3Q9Y446 797 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 BACE2Q9Y5Z0 518 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 COMMD10Q9Y6G5 202 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 SLC30A1Q9Y6M5 507 aa11.1□□□□□ -0.63
CHMP3-209ENST00000494623 FXYD1O00168 92 aa11.09□□□□□ -0.63
CHMP3-209ENST00000494623 KLK8O60259 260 aa11.09□□□□□ -0.63
CHMP3-209ENST00000494623 TPST1O60507 370 aa11.09□□□□□ -0.63
CHMP3-209ENST00000494623 TNFAIP8O95379 198 aa11.09□□□□□ -0.63
CHMP3-209ENST00000494623 PSMA3P25788 255 aa11.09□□□□□ -0.63
CHMP3-209ENST00000494623 PTGER3P43115 390 aa11.09□□□□□ -0.63
CHMP3-209ENST00000494623 KCNK10P57789 538 aa11.09□□□□□ -0.63
CHMP3-209ENST00000494623 PRMT9Q6P2P2 845 aa11.09□□□□□ -0.63
CHMP3-209ENST00000494623 ZBTB49Q6ZSB9 765 aa11.09□□□□□ -0.63
CHMP3-209ENST00000494623 GPRIN3Q6ZVF9 776 aa11.09□□□□□ -0.63
CHMP3-209ENST00000494623 OR52B6Q8NGF0 335 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms