RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 OR13C4Q8NGS5 318 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 STYXQ8WUJ0 223 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 CCDC74AQ96AQ1 378 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 CCDC3Q9BQI4 270 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 LRIT1Q9P2V4 623 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 PCYT1BQ9Y5K3 369 aaPredicted RBP17.13■□□□□ 0.33
MDC1-206ENST00000489540 MROH6A6NGR9 719 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 H7C0S8 307 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 ZW10O43264 779 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 KCNJ13O60928 360 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 TCEA3O75764 348 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 ECEL1O95672 775 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 COILP38432 576 aaPredicted RBP17.13■□□□□ 0.33
MDC1-206ENST00000489540 BASP1P80723 227 aaKnown RBP17.13■□□□□ 0.33
MDC1-206ENST00000489540 TMPRSS15P98073 1019 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 CDK16Q00536 496 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 TARDBPQ13148 414 aaKnown RBP eCLIP17.13■□□□□ 0.33
MDC1-206ENST00000489540 NFATC2Q13469 925 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 SEPT6Q14141 434 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 KHDC1Q4VXA5 237 aaKnown RBP17.13■□□□□ 0.33
MDC1-206ENST00000489540 GPRC6AQ5T6X5 926 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 ARL14Q8N4G2 192 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 GATA6Q92908 595 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 ULK4Q96C45 1275 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 CASS4Q9NQ75 786 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 KCND1Q9NSA2 647 aa17.13■□□□□ 0.33
MDC1-206ENST00000489540 NLE1Q9NVX2 485 aaPredicted RBP17.13■□□□□ 0.33
MDC1-206ENST00000489540 PIH1D1Q9NWS0 290 aaKnown RBP17.13■□□□□ 0.33
MDC1-206ENST00000489540 GOLGA4Q13439 2230 aaKnown RBP17.12■□□□□ 0.33
MDC1-206ENST00000489540 HEATR9A2RTY3 570 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 AGAP14A8MT82 685 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 SLC2A4P14672 509 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 ZNF7P17097 686 aaPredicted RBP17.12■□□□□ 0.33
MDC1-206ENST00000489540 MSH3P20585 1137 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 ITGALP20701 1170 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 PSMA3P25788 255 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 CLDN6P56747 220 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 BIRC2Q13490 618 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 GPR33Q49SQ1 333 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 PAPD7Q5XG87 772 aaKnown RBP17.12■□□□□ 0.33
MDC1-206ENST00000489540 TTC27Q6P3X3 843 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 CRTC3Q6UUV7 619 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 UNQ6494/PRO21346Q6UXR6 183 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 SNX20Q7Z614 316 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 SFTPA2Q8IWL1 248 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 NAGSQ8N159 534 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 HEXDCQ8WVB3 486 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 GRAMD1AQ96CP6 724 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 CDKN2AIPNLQ96HQ2 116 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 ZNF514Q96K75 400 aaPredicted RBP17.12■□□□□ 0.33
MDC1-206ENST00000489540 DNAJC1Q96KC8 554 aaKnown RBP17.12■□□□□ 0.33
MDC1-206ENST00000489540 CNTNAP3BQ96NU0 1288 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 DEPDC7Q96QD5 511 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 RANBP9Q96S59 729 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 NAPGQ99747 312 aaPredicted RBP17.12■□□□□ 0.33
MDC1-206ENST00000489540 TIMM29Q9BSF4 260 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 TMEM121BQ9BXQ6 578 aaPredicted RBP17.12■□□□□ 0.33
MDC1-206ENST00000489540 CNTNAP3Q9BZ76 1288 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 KLC4Q9NSK0 619 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 CRLS1Q9UJA2 301 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 KCNK6Q9Y257 313 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 DNMT3AQ9Y6K1 912 aaPredicted RBP17.12■□□□□ 0.33
MDC1-206ENST00000489540 SLC30A1Q9Y6M5 507 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 RNF215Q9Y6U7 377 aa17.12■□□□□ 0.33
MDC1-206ENST00000489540 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.11■□□□□ 0.33
MDC1-206ENST00000489540 OR5K4A6NMS3 321 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 RHPN2P1A8MT19 583 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 ZNF185O15231 689 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 KRT14P02533 472 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 VCLP18206 1134 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 ADRA1DP25100 572 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 GRIA1P42261 906 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 FNTAP49354 379 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 MAZP56270 477 aaKnown RBP17.11■□□□□ 0.33
MDC1-206ENST00000489540 CAMK2BQ13554 666 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 INSCQ1MX18 579 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 CCDC137Q6PK04 289 aaKnown RBP17.11■□□□□ 0.33
MDC1-206ENST00000489540 NLRP9Q7RTR0 991 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 MARCH9Q86YJ5 346 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 TRAPPC5Q8IUR0 188 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 ZNF547Q8IVP9 402 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 RASGEF1AQ8N9B8 481 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 SMARCAL1Q9NZC9 954 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 TBC1D29Q9UFV1 150 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 RABGEF1Q9UJ41 708 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 RIMKLBQ9ULI2 386 aa17.11■□□□□ 0.33
MDC1-206ENST00000489540 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.11■□□□□ 0.337e-6■□□□□ 11
MDC1-206ENST00000489540 CTAGE9A4FU28 777 aa17.1■□□□□ 0.33
MDC1-206ENST00000489540 TMEM8BA6NDV4 472 aa17.1■□□□□ 0.33
MDC1-206ENST00000489540 C1QTNF9BB2RNN3 333 aa17.1■□□□□ 0.33
MDC1-206ENST00000489540 NTN3O00634 580 aaPredicted RBP17.1■□□□□ 0.33
MDC1-206ENST00000489540 GPR39O43194 453 aa17.1■□□□□ 0.33
MDC1-206ENST00000489540 PHF2O75151 1096 aa17.1■□□□□ 0.33
MDC1-206ENST00000489540 C1QTNF9P0C862 333 aa17.1■□□□□ 0.33
MDC1-206ENST00000489540 RALBP11234 206 aa17.1■□□□□ 0.33
MDC1-206ENST00000489540 AKT1P31749 480 aa17.1■□□□□ 0.33
MDC1-206ENST00000489540 MC4RP32245 332 aa17.1■□□□□ 0.33
MDC1-206ENST00000489540 CA5AP35218 305 aa17.1■□□□□ 0.33
MDC1-206ENST00000489540 GPR3P46089 330 aa17.1■□□□□ 0.33
MDC1-206ENST00000489540 TRIP13Q15645 432 aaPredicted RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms