RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 AOPEPQ8N6M6 819 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 Q8NA96 180 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 ARRDC2Q8TBH0 407 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 KLHL6Q8WZ60 621 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 MAML1Q92585 1016 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 ERGIC2Q96RQ1 377 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 CARD9Q9H257 536 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 ARFGAP3Q9NP61 516 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 CUEDC1Q9NWM3 386 aaPredicted RBP15.13■□□□□ 0.01
MCF2L-228ENST00000487354 LNPEPQ9UIQ6 1025 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 PIPSLA2A3N6 862 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 OR5K4A6NMS3 321 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 RNF8O76064 485 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 PCK1P35558 622 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 NIPAL4Q0D2K0 466 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 MRPL49Q13405 166 aaKnown RBP15.12■□□□□ 0.01
MCF2L-228ENST00000487354 UGT8Q16880 541 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 E4F1Q66K89 784 aaPredicted RBP15.12■□□□□ 0.01
MCF2L-228ENST00000487354 RASGRP3Q8IV61 690 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 BBS5Q8N3I7 341 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 EFCAB3Q8N7B9 438 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 KLC4Q9NSK0 619 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.12■□□□□ 0.01
MCF2L-228ENST00000487354 FANCLQ9NW38 375 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 SEMA5BQ9P283 1151 aa15.12■□□□□ 0.01
MCF2L-228ENST00000487354 LIMA1Q9UHB6 759 aaKnown RBP15.12■□□□□ 0.01
MCF2L-228ENST00000487354 PCDHGA9Q9Y5G4 932 aaKnown RBP15.12■□□□□ 0.01
MCF2L-228ENST00000487354 SPTBP11277 2137 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 WIPF3A6NGB9 483 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 ENO4A6NNW6 628 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 TCP11X1B4DZS4 312 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 C21orf140B9A014 251 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 CHUKO15111 745 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 MFSD11O43934 449 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 RARAP10276 462 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 FERP16591 822 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 IL4RP24394 825 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 DCTP40126 519 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 PWWP2BQ6NUJ5 590 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 PHYKPLQ8IUZ5 450 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 ZNF547Q8IVP9 402 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 AVL9Q8NBF6 648 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 HSPH1Q92598 858 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 TCTN2Q96GX1 697 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 POLR1EQ9GZS1 481 aaKnown RBP15.11■□□□□ 0.01
MCF2L-228ENST00000487354 HSD3B7Q9H2F3 369 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 PCDH18Q9HCL0 1135 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 PADI1Q9ULC6 663 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 FER1L5A0AVI2 2057 aa15.11■□□□□ 0.01
MCF2L-228ENST00000487354 C1orf232A0A0U1RR37 186 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 CEACAM4O75871 244 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 MMP2P08253 660 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 NELFEP18615 380 aaKnown RBP15.1■□□□□ 0.01
MCF2L-228ENST00000487354 CASP14P31944 242 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 ARL4AP40617 200 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 PGDP52209 483 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 SLC25A11Q02978 314 aaKnown RBP15.1■□□□□ 0.01
MCF2L-228ENST00000487354 GALNT2Q10471 571 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 GPR18Q14330 331 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 QPCTQ16769 361 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 PLA2G4EQ3MJ16 856 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 KHDC1Q4VXA5 237 aaKnown RBP15.1■□□□□ 0.01
MCF2L-228ENST00000487354 FAM199XQ6PEV8 388 aaPredicted RBP15.1■□□□□ 0.01
MCF2L-228ENST00000487354 CRTC3Q6UUV7 619 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 CERS6Q6ZMG9 384 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 FAM92BQ6ZTR7 304 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 ADGRG6Q86SQ4 1221 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 PPP1R3BQ86XI6 285 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.1■□□□□ 0.01
MCF2L-228ENST00000487354 LPCAT1Q8NF37 534 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 ADAMTS17Q8TE56 1095 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 SLC41A2Q96JW4 573 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 SLC25A23Q9BV35 468 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 NUP62CLQ9H1M0 184 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 OR2AG1Q9H205 316 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 OSGEPL1Q9H4B0 414 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 FAM83DQ9H4H8 585 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 SLC40A1Q9NP59 571 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 EPHA6Q9UF33 1036 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 DNPEPQ9ULA0 475 aa15.1■□□□□ 0.01
MCF2L-228ENST00000487354 OTOGQ6ZRI0 2925 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 IGHV5-51A0A0C4DH38 117 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 OR52A4PA6NMU1 304 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 RASSF9O75901 435 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 VIPP01282 170 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 HLA-DQB2P05538 268 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 CD48P09326 243 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 FOLR1P15328 257 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 NOP2P46087 812 aaKnown RBP15.09■□□□□ 0.01
MCF2L-228ENST00000487354 EPHB1P54762 984 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 RPL26P61254 145 aaKnown RBP15.09■□□□□ 0.01
MCF2L-228ENST00000487354 UBXN1Q04323 297 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 MMRN1Q13201 1228 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 KCNAB1Q14722 419 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 INPP5JQ15735 1006 aaPredicted RBP15.09■□□□□ 0.01
MCF2L-228ENST00000487354 SEPT7Q16181 437 aaKnown RBP15.09■□□□□ 0.01
MCF2L-228ENST00000487354 EIF2S3LQ2VIR3 472 aaKnown RBP15.09■□□□□ 0.01
MCF2L-228ENST00000487354 CACHD1Q5VU97 1274 aa15.09■□□□□ 0.01
MCF2L-228ENST00000487354 ZNF517Q6ZMY9 492 aaPredicted RBP15.09■□□□□ 0.01
MCF2L-228ENST00000487354 ZNF571Q7Z3V5 609 aaPredicted RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 1155.2 ms