RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 FAM182AQ5T1J6 154 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 LVRNQ6Q4G3 990 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 ADAMTSL4Q6UY14 1074 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 PCGF5Q86SE9 256 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 TRIM74Q86UV6 250 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 ALDH16A1Q8IZ83 802 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 PNPLA1Q8N8W4 532 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 AVL9Q8NBF6 648 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 OR4K2Q8NGD2 314 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 OR6C4Q8NGE1 309 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 OR6P1Q8NGX9 317 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 SLC35B2Q8TB61 432 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 HEXDCQ8WVB3 486 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 GLYATL1Q969I3 302 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 PDXPQ96GD0 296 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 OXNAD1Q96HP4 312 aaPredicted RBP7.97□□□□□ -1.13
USP40-216ENST00000485943 PDLIM2Q96JY6 352 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 PLEKHG4BQ96PX9 1271 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 LYSMD1Q96S90 227 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 TSSK1BQ9BXA7 367 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 OR2AG1Q9H205 316 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 KCNF1Q9H3M0 494 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 RMI1Q9H9A7 625 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 MRPL40Q9NQ50 206 aaKnown RBP7.97□□□□□ -1.13
USP40-216ENST00000485943 DCTN4Q9UJW0 460 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 SNX12Q9UMY4 172 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 DRG1Q9Y295 367 aaKnown RBP7.97□□□□□ -1.13
USP40-216ENST00000485943 BTBD3Q9Y2F9 522 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 ARL5AQ9Y689 179 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.97□□□□□ -1.13
USP40-216ENST00000485943 MYO15AQ9UKN7 3530 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 GVINP1Q7Z2Y8 2422 aa7.97□□□□□ -1.13
USP40-216ENST00000485943 USP34Q70CQ2 3546 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 LOC285095A0A1B0GVY8 99 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 CCDC78A2IDD5 438 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 ANKRD33BA6NCL7 494 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 TMEM202A6NGA9 273 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 GPR89AB7ZAQ6 455 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 LMO7DNF2Z398 122 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 CES2O00748 559 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 GIPC1O14908 333 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 KMOO15229 486 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 GRID2O43424 1007 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 VEGFDO43915 354 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 PHF2O75151 1096 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 IVLP07476 585 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 GPR89BP0CG08 455 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 ACP5P13686 325 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 BPIP17213 487 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 TPH1P17752 444 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 TEAD1P28347 426 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 MAPK1P28482 360 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 TRIM23P36406 574 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 KCNJ1P48048 391 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 CKAP4Q07065 602 aaKnown RBP7.96□□□□□ -1.14
USP40-216ENST00000485943 DNAJC3Q13217 504 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 ILKQ13418 452 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 SPIDRQ14159 915 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 PTPRRQ15256 657 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 MAP9Q49MG5 647 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 C4orf17Q53FE4 359 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 FASTKD1Q53R41 847 aaKnown RBP7.96□□□□□ -1.14
USP40-216ENST00000485943 AARS2Q5JTZ9 985 aaKnown RBP7.96□□□□□ -1.14
USP40-216ENST00000485943 DNTTIP2Q5QJE6 756 aaKnown RBP7.96□□□□□ -1.14
USP40-216ENST00000485943 N4BP2L1Q5TBK1 243 aaPredicted RBP7.96□□□□□ -1.14
USP40-216ENST00000485943 TMEM214Q6NUQ4 689 aaKnown RBP7.96□□□□□ -1.14
USP40-216ENST00000485943 DRICH1Q6PGQ1 229 aaPredicted RBP7.96□□□□□ -1.14
USP40-216ENST00000485943 KDELC1Q6UW63 502 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 NLRP9Q7RTR0 991 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 EFL1Q7Z2Z2 1120 aaKnown RBP7.96□□□□□ -1.14
USP40-216ENST00000485943 TMC3Q7Z5M5 1100 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 TECPR1Q7Z6L1 1165 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 LRRTM4Q86VH4 590 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 HOOK3Q86VS8 718 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 REXO1L1PQ8IX06 675 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 KLHL7Q8IXQ5 586 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 ARL10Q8N8L6 244 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 OR52K1Q8NGK4 314 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 WDR48Q8TAF3 677 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 IFI44Q8TCB0 444 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 ZNF398Q8TD17 642 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 ACTRT1Q8TDG2 376 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 STYXQ8WUJ0 223 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 OR1E3Q8WZA6 343 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 CXorf40BQ96DE9 158 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 MS4A14Q96JA4 679 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 ZNF514Q96K75 400 aaPredicted RBP7.96□□□□□ -1.14
USP40-216ENST00000485943 APOLD1Q96LR9 279 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 TBATAQ96M53 351 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 SMIM14Q96QK8 99 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 SLC38A3Q99624 504 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 LRRC61Q9BV99 259 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 TEX101Q9BY14 249 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 PHACTR1Q9C0D0 580 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 TMEM168Q9H0V1 697 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 CCDC68Q9H2F9 335 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 TRIM39Q9HCM9 518 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 FGF22Q9HCT0 170 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 ARFGAP3Q9NP61 516 aa7.96□□□□□ -1.14
USP40-216ENST00000485943 PIH1D1Q9NWS0 290 aaKnown RBP7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms