RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	CA4	P22748	312 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	XPA	P23025	273 aa	Predicted RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	STIP1	P31948	543 aa	Known RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	GRIA1	P42261	906 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	BLK	P51451	505 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	CLCNKA	P51800	687 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	WNT3A	P56704	352 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	SRP54	P61011	504 aa	Known RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	SIM1	P81133	766 aa	Predicted RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	CDK3	Q00526	305 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	MPP3	Q13368	585 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	SQSTM1	Q13501	440 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	SLC1A5	Q15758	541 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	SIRPB2	Q5JXA9	342 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	ANKRD20A2	Q5SQ80	823 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	PERM1	Q5SV97	790 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	FAXC	Q5TGI0	409 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	ANKRD20A1	Q5TYW2	823 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	ANKRD20A3	Q5VUR7	823 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	ZCCHC8	Q6NZY4	707 aa	Known RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	TTC27	Q6P3X3	843 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	CCNI2	Q6ZMN8	369 aa	Predicted RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	ZNF438	Q7Z4V0	828 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	PTAR1	Q7Z6K3	402 aa	Predicted RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	ZC3H18	Q86VM9	953 aa	Known RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	SLC13A5	Q86YT5	568 aa	Predicted RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	PHACTR4	Q8IZ21	702 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	RASGEF1C	Q8N431	466 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	FSTL5	Q8N475	847 aa	Predicted RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	UBL4B	Q8N7F7	174 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	GPR26	Q8NDV2	337 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	LPCAT1	Q8NF37	534 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	GPR156	Q8NFN8	814 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	OR56A4	Q8NGH8	313 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	PATE1	Q8WXA2	126 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	NUS1	Q96E22	293 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	APOLD1	Q96LR9	279 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	SPATA13	Q96N96	652 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	PLEKHG4B	Q96PX9	1271 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	VPS35	Q96QK1	796 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	NRTN	Q99748	197 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	WDR83	Q9BRX9	315 aa	Known RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	TRIM56	Q9BRZ2	755 aa	Known RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	DUSP23	Q9BVJ7	150 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	SCNM1	Q9BWG6	230 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	ADGRE3	Q9BY15	652 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	TRABD	Q9H4I3	376 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	TRNAU1AP	Q9NX07	287 aa	Known RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	IL17C	Q9P0M4	197 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	VPS18	Q9P253	973 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	FAM153A	Q9UHL3	310 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	ANGPTL2	Q9UKU9	493 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	GUCA1B	Q9UMX6	200 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	APOBEC2	Q9Y235	224 aa	Known RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	DRG1	Q9Y295	367 aa	Known RBP	5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	ZKSCAN5	Q9Y2L8	839 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	BOD1L1	Q8NFC6	3051 aa		5.68	□□□□□ -1.5
CUX1-208	ENST00000485792	NUP210L	Q5VU65	1888 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	PRAMEF33	A0A0G2JMD5	474 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	PRSS38	A1L453	326 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	FAM149A	A5PLN7	773 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792		A6NCN8	305 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	GOLGA6L6	A8MZA4	724 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	GPR89A	B7ZAQ6	455 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792		H7C0S8	307 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	PDE2A	O00408	941 aa	Predicted RBP	5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	NTN3	O00634	580 aa	Predicted RBP	5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	CES2	O00748	559 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	ENC1	O14682	589 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	TP73	O15350	636 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	FFAR2	O15552	330 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	BUD23	O43709	281 aa	Known RBP	5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	LIAS	O43766	372 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	NOBOX	O60393	691 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	USP12	O75317	370 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	PPFIA2	O75334	1257 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	SUN1	O94901	812 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	RASGRP1	O95267	797 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	LDOC1	O95751	146 aa	Predicted RBP	5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	ZSCAN5DP	P0CG00	497 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	GPR89B	P0CG08	455 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	PNLIP	P16233	465 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	EPB42	P16452	691 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	BPI	P17213	487 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	HLA-DPA1	P20036	260 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	CD33	P20138	364 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	PSMB4	P28070	264 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	HTR1B	P28222	390 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	GRN	P28799	593 aa	Known RBP	5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	EIF1AX	P47813	144 aa	Known RBP	5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	POLD2	P49005	469 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	THOP1	P52888	689 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	EIF3E	P60228	445 aa	Known RBP	5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	XIAP	P98170	497 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	PPARD	Q03181	441 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	SRSF11	Q05519	484 aa	Known RBP	5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	ITK	Q08881	620 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	C1orf61	Q13536	156 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	ARHGEF7	Q14155	803 aa		5.67	□□□□□ -1.5
CUX1-208	ENST00000485792	ACOX1	Q15067	660 aa		5.67	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms