RNA–Protein interactions for RNA: ENST00000485567.1

FN1-222, Transcript of fibronectin 1, human

TSL 1 (best)

Gene FN1, Length 584 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FN1-222	ENST00000485567	AGO1	Q9UL18	857 aa	Known RBP	4.05	□□□□□ -1.76
FN1-222	ENST00000485567	ISY1	Q9ULR0	285 aa	Known RBP	4.05	□□□□□ -1.76
FN1-222	ENST00000485567	CLSPN	Q9HAW4	1339 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	OR6C75	A6NL08	312 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567		B4DGG1	531 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	FAM90A26	D6RGX4	464 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567		H0YIN7	160 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	SOCS2	O14508	198 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	HS3ST1	O14792	307 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	PPEF2	O14830	753 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	CLGN	O14967	610 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	IPO8	O15397	1037 aa	Known RBP	4.04	□□□□□ -1.76
FN1-222	ENST00000485567	NDUFS7	O75251	213 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	MOSPD3	O75425	235 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	VPREB1	P12018	145 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	SRC	P12931	536 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	HOXB2	P14652	356 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	IFNAR1	P17181	557 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	GJA1	P17302	382 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	CSE1L	P55060	971 aa	Known RBP	4.04	□□□□□ -1.76
FN1-222	ENST00000485567	SEC61B	P60468	96 aa	Known RBP	4.04	□□□□□ -1.76
FN1-222	ENST00000485567	KRT83	P78385	493 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	SCARB2	Q14108	478 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	COG2	Q14746	738 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	RABEP1	Q15276	862 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	SNAPC1	Q16533	368 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	SYT16	Q17RD7	645 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	MYLK3	Q32MK0	819 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	ODF3L2	Q3SX64	289 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	EFHC1	Q5JVL4	640 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	FAM69B	Q5VUD6	431 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	FAM109B	Q6ICB4	259 aa	Predicted RBP	4.04	□□□□□ -1.76
FN1-222	ENST00000485567	SLC36A4	Q6YBV0	504 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	COLCA1	Q6ZS62	124 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	GALNTL5	Q7Z4T8	443 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	CAMKMT	Q7Z624	323 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	CEP97	Q8IW35	865 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	CHERP	Q8IWX8	916 aa	Known RBP	4.04	□□□□□ -1.76
FN1-222	ENST00000485567	RASGEF1C	Q8N431	466 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	CHCHD4	Q8N4Q1	142 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	GCSAM	Q8N6F7	178 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	XXYLT1	Q8NBI6	393 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	DNAAF4	Q8WXU2	420 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	RHBDF1	Q96CC6	855 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	NEK1	Q96PY6	1258 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	RAB3IP	Q96QF0	476 aa	Predicted RBP	4.04	□□□□□ -1.76
FN1-222	ENST00000485567	CRAMP1	Q96RY5	1269 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	SMC6	Q96SB8	1091 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	GFI1	Q99684	422 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	SLC25A33	Q9BSK2	321 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	SPRY4	Q9C004	299 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	SPRTN	Q9H040	489 aa	Predicted RBP	4.04	□□□□□ -1.76
FN1-222	ENST00000485567	FAM234A	Q9H0X4	552 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	FOXP1	Q9H334	677 aa	Predicted RBP	4.04	□□□□□ -1.76
FN1-222	ENST00000485567	RAD21L1	Q9H4I0	556 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	ZWILCH	Q9H900	591 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	PCDH9	Q9HC56	1237 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	CHMP1A	Q9HD42	196 aa	Predicted RBP	4.04	□□□□□ -1.76
FN1-222	ENST00000485567	PIH1D3	Q9NQM4	214 aa	Known RBP	4.04	□□□□□ -1.76
FN1-222	ENST00000485567	OLAH	Q9NV23	265 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	HIF1AN	Q9NWT6	349 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	C11orf21	Q9P2W6	132 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	TINAG	Q9UJW2	476 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	FZD10	Q9ULW2	581 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	PCDHGA5	Q9Y5G8	931 aa		4.04	□□□□□ -1.76
FN1-222	ENST00000485567	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	4.03	□□□□□ -1.76
FN1-222	ENST00000485567		A0A0U1RQJ8	604 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	URAD	A6NGE7	173 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	INAFM1	C9JVW0	142 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	NDUFS4	O43181	175 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	PLPP2	O43688	288 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	PRAMEF11	O60813	436 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	PPFIA2	O75334	1257 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	ZNF217	O75362	1048 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	CREG1	O75629	220 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	DDN	O94850	711 aa	Predicted RBP	4.03	□□□□□ -1.76
FN1-222	ENST00000485567	CH25H	O95992	272 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	BCL10	O95999	233 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	FBL	P22087	321 aa	Known RBP	4.03	□□□□□ -1.76
FN1-222	ENST00000485567	HRH2	P25021	359 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	MATR3	P43243	847 aa	Known RBP eCLIP	4.03	□□□□□ -1.76
FN1-222	ENST00000485567	RAB28	P51157	221 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	PLCD1	P51178	756 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	TAS2R38	P59533	333 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	ABAT	P80404	500 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	PPAT	Q06203	517 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	DSC1	Q08554	894 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567		Q0VFX4	171 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	GAGE2B	Q13066	116 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	KRT33B	Q14525	404 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	MEP1A	Q16819	746 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	GAGE2E	Q4V326	116 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	FAM98B	Q52LJ0	330 aa	Known RBP	4.03	□□□□□ -1.76
FN1-222	ENST00000485567	TDRD12	Q587J7	1177 aa	Known RBP	4.03	□□□□□ -1.76
FN1-222	ENST00000485567	ZDHHC20	Q5W0Z9	365 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	C18orf63	Q68DL7	685 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	TYW3	Q6IPR3	259 aa	Known RBP	4.03	□□□□□ -1.76
FN1-222	ENST00000485567	GAGE2A	Q6NT46	116 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	BRAT1	Q6PJG6	821 aa		4.03	□□□□□ -1.76
FN1-222	ENST00000485567	IRF2BP2	Q7Z5L9	587 aa		4.03	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms