RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 SRPK1Q96SB4 655 aaKnown RBP17.27■□□□□ 0.36
COL7A1-208ENST00000470076 ANP32EQ9BTT0 268 aa17.27■□□□□ 0.36
COL7A1-208ENST00000470076 GPR63Q9BZJ6 419 aa17.27■□□□□ 0.36
COL7A1-208ENST00000470076 OR2AG1Q9H205 316 aa17.27■□□□□ 0.36
COL7A1-208ENST00000470076 CLMPQ9H6B4 373 aa17.27■□□□□ 0.36
COL7A1-208ENST00000470076 FBXO8Q9NRD0 319 aa17.27■□□□□ 0.36
COL7A1-208ENST00000470076 KLC4Q9NSK0 619 aa17.27■□□□□ 0.36
COL7A1-208ENST00000470076 PILRAQ9UKJ1 303 aa17.27■□□□□ 0.36
COL7A1-208ENST00000470076 SHOC2Q9UQ13 582 aa17.27■□□□□ 0.36
COL7A1-208ENST00000470076 ZNF711Q9Y462 761 aa17.27■□□□□ 0.36
COL7A1-208ENST00000470076 CHUKO15111 745 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 KRT1P04264 644 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 TPM1P09493 284 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 PIRTP0C851 137 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 PTMSP20962 102 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 MAPK9P45984 424 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 KCNC4Q03721 635 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 PCSK7Q16549 785 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 ALS2CLQ60I27 953 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 CCDC70Q6NSX1 233 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 NPNTQ6UXI9 565 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 RFX6Q8HWS3 928 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 PLXDC1Q8IUK5 500 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 GLYATL1Q969I3 302 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 RTP4Q96DX8 246 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 CCDC42Q96M95 316 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 PLEKHG4BQ96PX9 1271 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 SPRY4Q9C004 299 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 OSGEPL1Q9H4B0 414 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 UCK1Q9HA47 277 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 ARFGAP3Q9NP61 516 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 PRDM8Q9NQV8 689 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 ABHD10Q9NUJ1 306 aa17.26■□□□□ 0.35
COL7A1-208ENST00000470076 GEMIN8Q9NWZ8 242 aaKnown RBP17.26■□□□□ 0.35
COL7A1-208ENST00000470076 DDX56Q9NY93 547 aaKnown RBP17.26■□□□□ 0.35
COL7A1-208ENST00000470076 BSNQ9UPA5 3926 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 PPFIA2O75334 1257 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 WISP1O95388 367 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 NDST3O95803 873 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 SLC4A1P02730 911 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 XRCC1P18887 633 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-208ENST00000470076 MAP4P27816 1152 aaKnown RBP17.25■□□□□ 0.35
COL7A1-208ENST00000470076 SLC1A1P43005 524 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 UBE2IP63279 158 aaKnown RBP17.25■□□□□ 0.35
COL7A1-208ENST00000470076 INSCQ1MX18 579 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 TEX44Q53QW1 395 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 ZNF648Q5T619 568 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-208ENST00000470076 BORAQ6PGQ7 559 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 BZW1Q7L1Q6 419 aaKnown RBP17.25■□□□□ 0.35
COL7A1-208ENST00000470076 ADGRG6Q86SQ4 1221 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 RHOT1Q8IXI2 618 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 NLGN4XQ8N0W4 816 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 NLGN4YQ8NFZ3 816 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-208ENST00000470076 RNF25Q96BH1 459 aaPredicted RBP17.25■□□□□ 0.35
COL7A1-208ENST00000470076 CHP1Q99653 195 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 TBC1D10AQ9BXI6 508 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 ADNPQ9H2P0 1102 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 GLOD4Q9HC38 313 aa17.25■□□□□ 0.35
COL7A1-208ENST00000470076 MN1Q10571 1320 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-208ENST00000470076 UBR5O95071 2799 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-208ENST00000470076 A0A0A6YYK5 440 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-208ENST00000470076 ZNF891A8MT65 544 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-208ENST00000470076 KMOO15229 486 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 VEGFDO43915 354 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 ANKRD34CP0C6C1 535 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 BPIP17213 487 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 NR2C2P49116 596 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 DYNLT1P63172 113 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 CLCA4Q14CN2 919 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 CRTC3Q6UUV7 619 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 ATG14Q6ZNE5 492 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 LRRTM4Q86VH4 590 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 SPATA22Q8NHS9 363 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 KIAA1143Q96AT1 154 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-208ENST00000470076 SLC45A3Q96JT2 553 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 CATSPER2Q96P56 530 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 CTRCQ99895 268 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 TIMM29Q9BSF4 260 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 EFHD1Q9BUP0 239 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 SLC25A18Q9H1K4 315 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 TRIT1Q9H3H1 467 aaKnown RBP17.24■□□□□ 0.35
COL7A1-208ENST00000470076 NHEJ1Q9H9Q4 299 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-208ENST00000470076 SPTLC3Q9NUV7 552 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 KLHL3Q9UH77 587 aa17.24■□□□□ 0.35
COL7A1-208ENST00000470076 TMEM184BQ9Y519 407 aaPredicted RBP17.24■□□□□ 0.35
COL7A1-208ENST00000470076 PYCARD-AS1I3L0S3 204 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 POLR1CO15160 346 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-208ENST00000470076 MFAP3LO75121 409 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 MT-CYBP00156 380 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-208ENST00000470076 VIPP01282 170 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 C9P02748 559 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 ZNF7P17097 686 aaPredicted RBP17.23■□□□□ 0.35
COL7A1-208ENST00000470076 CSRP3P50461 194 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 TCEAL1Q15170 157 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 FAM182AQ5T1J6 154 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 TMEM26Q6ZUK4 368 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 VSTM4Q8IW00 320 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 TRIM48Q8IWZ4 208 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 TEKT5Q96M29 485 aa17.23■□□□□ 0.35
COL7A1-208ENST00000470076 VPS35Q96QK1 796 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms