RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 CCDC74AQ96AQ1 378 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 OR2AG1Q9H205 316 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 PAK5Q9P286 719 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 ZNHIT2Q9UHR6 403 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 TTC7AQ9ULT0 858 aaPredicted RBP17.14■□□□□ 0.33
USP39-208ENST00000455732 PLEKHM1Q9Y4G2 1056 aa17.14■□□□□ 0.33
USP39-208ENST00000455732 PTPRQQ9UMZ3 2332 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 GRID2O43424 1007 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 BUD23O43709 281 aaKnown RBP17.13■□□□□ 0.33
USP39-208ENST00000455732 TLX3O43711 291 aaPredicted RBP17.13■□□□□ 0.33
USP39-208ENST00000455732 BRINP1O60477 761 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 SUN1O94901 812 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 HOXB3P14651 431 aaPredicted RBP17.13■□□□□ 0.33
USP39-208ENST00000455732 MSNP26038 577 aaKnown RBP17.13■□□□□ 0.33
USP39-208ENST00000455732 CLCNKAP51800 687 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 PDX1P52945 283 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 SEMA5AQ13591 1074 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 CHRNA6Q15825 494 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 FAM151BQ6UXP7 276 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 RBM44Q6ZP01 1051 aaKnown RBP17.13■□□□□ 0.33
USP39-208ENST00000455732 ZNF438Q7Z4V0 828 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 DDHD1Q8NEL9 900 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 GRAMD1AQ96CP6 724 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 PBKQ96KB5 322 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 ETNK1Q9HBU6 452 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 ENTPD2Q9Y5L3 495 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 BAHCC1Q9P281 2608 aa17.13■□□□□ 0.33
USP39-208ENST00000455732 A0A087WV48 116 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 A0A1W2PNU3 283 aaPredicted RBP17.12■□□□□ 0.33
USP39-208ENST00000455732 LDB2O43679 373 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 KIF5CO60282 957 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 PRAMEF1O95521 474 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 COL9A2Q14055 689 aaPredicted RBP17.12■□□□□ 0.33
USP39-208ENST00000455732 NR1D2Q14995 579 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 KHDC1Q4VXA5 237 aaKnown RBP17.12■□□□□ 0.33
USP39-208ENST00000455732 LDLRAP1Q5SW96 308 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 ZNF648Q5T619 568 aaPredicted RBP17.12■□□□□ 0.33
USP39-208ENST00000455732 C4orf22Q6V702 233 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 CHST15Q7LFX5 561 aaPredicted RBP17.12■□□□□ 0.33
USP39-208ENST00000455732 NAGSQ8N159 534 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 SLC35F6Q8N357 371 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 PRELID2Q8N945 189 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 OR4K2Q8NGD2 314 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 TIMM29Q9BSF4 260 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 ZCCHC2Q9C0B9 1178 aaKnown RBP17.12■□□□□ 0.33
USP39-208ENST00000455732 ARFGAP3Q9NP61 516 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 PRKAB1Q9Y478 270 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 KCTD3Q9Y597 815 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 RNF215Q9Y6U7 377 aa17.12■□□□□ 0.33
USP39-208ENST00000455732 A0A1W2PQM1 296 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 A6NCN8 305 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 AGAP14A8MT82 685 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 CES2O00748 559 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 MTX2O75431 263 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 DXOO77932 396 aaKnown RBP17.11■□□□□ 0.33
USP39-208ENST00000455732 CDK14O94921 469 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 ECEL1O95672 775 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 MPOP05164 745 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 ACP5P13686 325 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 ETS1P14921 441 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 PSMA3P25788 255 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 HADHAP40939 763 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 LSSP48449 732 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 MAZP56270 477 aaKnown RBP17.11■□□□□ 0.33
USP39-208ENST00000455732 CCL7P80098 99 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 XIAPP98170 497 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 TMEM115Q12893 351 aaPredicted RBP17.11■□□□□ 0.33
USP39-208ENST00000455732 SPIDRQ14159 915 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 PTPRCAPQ14761 206 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 C19orf48Q6RUI8 117 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 LRRTM4Q86VH4 590 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 ARL14Q8N4G2 192 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 GLIS1Q8NBF1 620 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 OR13C4Q8NGS5 318 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 SNIP1Q8TAD8 396 aaKnown RBP17.11■□□□□ 0.33
USP39-208ENST00000455732 ATXN7L3BQ96GX2 97 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 NAP1L3Q99457 506 aaPredicted RBP17.11■□□□□ 0.33
USP39-208ENST00000455732 POLR1BQ9H9Y6 1135 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 RAB6BQ9NRW1 208 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 TRMT1Q9NXH9 659 aaKnown RBP17.11■□□□□ 0.33
USP39-208ENST00000455732 LRIT1Q9P2V4 623 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 FKBPLQ9UIM3 349 aa17.11■□□□□ 0.33
USP39-208ENST00000455732 ZNF106Q9H2Y7 1883 aaKnown RBP17.1■□□□□ 0.33
USP39-208ENST00000455732 PRR19A6NJB7 356 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 H7C0S8 307 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 KMOO15229 486 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 GPR39O43194 453 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 UGT1A9O60656 530 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 SRP72O76094 671 aaKnown RBP17.1■□□□□ 0.33
USP39-208ENST00000455732 UGT1A6P19224 532 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 UGT1A1P22309 533 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 UGT1A4P22310 534 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 RPL22P35268 128 aaKnown RBP17.1■□□□□ 0.33
USP39-208ENST00000455732 UGT1A3P35503 534 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 UGT1A5P35504 534 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 FASLGP48023 281 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 GABREP78334 506 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 CDH17Q12864 832 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 NFATC2Q13469 925 aa17.1■□□□□ 0.33
USP39-208ENST00000455732 TBC1D25Q3MII6 688 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms