RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ADGRG6Q86SQ4 1221 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 TRIM74Q86UV6 250 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 CILP2Q8IUL8 1156 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 CNTN4Q8IWV2 1026 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 SUMF1Q8NBK3 374 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 FUT8Q9BYC5 575 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 ARFGAP3Q9NP61 516 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 GPR27Q9NS67 375 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 NSMCE4AQ9NXX6 385 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 VPS18Q9P253 973 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 FBXO5Q9UKT4 447 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 VPS9D1Q9Y2B5 631 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 TMEM98Q9Y2Y6 226 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 OAS3Q9Y6K5 1087 aaKnown RBP15.62■□□□□ 0.09
USP40-206ENST00000443711 KNL1Q8NG31 2342 aa15.62■□□□□ 0.09
USP40-206ENST00000443711 CACNA1EQ15878 2313 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 IGLV3-16A0A075B6K0 115 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 SPTY2D1-AS1A0A0U1RR47 76 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 CCDC151A5D8V7 595 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 TMEM202A6NGA9 273 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 FAM159BA6NKW6 160 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 TNFRSF10CO14798 259 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 RIPK2O43353 540 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 MTX2O75431 263 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 CDK14O94921 469 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 S1PR4O95977 384 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 ABHD2P08910 425 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 ZNF7P17097 686 aaPredicted RBP15.61■□□□□ 0.09
USP40-206ENST00000443711 NBL1P41271 181 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 SLC1A2P43004 574 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 TMEM115Q12893 351 aaPredicted RBP15.61■□□□□ 0.09
USP40-206ENST00000443711 CTBP1Q13363 440 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 NAB1Q13506 487 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 GTF2H3Q13889 308 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 ZNF648Q5T619 568 aaPredicted RBP15.61■□□□□ 0.09
USP40-206ENST00000443711 DOK6Q6PKX4 331 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 ENPP7Q6UWV6 458 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 KIAA0408Q6ZU52 694 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 LDB1Q86U70 411 aaPredicted RBP15.61■□□□□ 0.09
USP40-206ENST00000443711 DENND6AQ8IWF6 608 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 RBFAQ8N0V3 343 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 C2CD4AQ8NCU7 369 aaPredicted RBP15.61■□□□□ 0.09
USP40-206ENST00000443711 OR56A4Q8NGH8 313 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 UBLCP1Q8WVY7 318 aaPredicted RBP15.61■□□□□ 0.09
USP40-206ENST00000443711 CYTH2Q99418 400 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 OR2AG1Q9H205 316 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 ARRDC1-AS1Q9H2J1 176 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 INTS10Q9NVR2 710 aaKnown RBP15.61■□□□□ 0.09
USP40-206ENST00000443711 ATXN10Q9UBB4 475 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 RABGEF1Q9UJ41 708 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 PIKFYVEQ9Y2I7 2098 aa15.61■□□□□ 0.09
USP40-206ENST00000443711 TP53BP1Q12888 1972 aaPredicted RBP15.6■□□□□ 0.09
USP40-206ENST00000443711 A0A1B0GVT2 93 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 GPR89AB7ZAQ6 455 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 CFIP05156 583 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 CEACAM5P06731 702 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 RETP07949 1114 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 GPR89BP0CG08 455 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 ATP1B2P14415 290 aaPredicted RBP15.6■□□□□ 0.09
USP40-206ENST00000443711 MPLP40238 635 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 NSG1P42857 185 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 LEPRP48357 1165 aaKnown RBP15.6■□□□□ 0.09
USP40-206ENST00000443711 NXPH1P58417 271 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 FZD2Q14332 565 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 KBTBD12Q3ZCT8 623 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 KHDC1Q4VXA5 237 aaKnown RBP15.6■□□□□ 0.09
USP40-206ENST00000443711 TPRG1LQ5T0D9 272 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 UBAP2Q5T6F2 1119 aaKnown RBP15.6■□□□□ 0.09
USP40-206ENST00000443711 LAYNQ6UX15 382 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 PACS1Q6VY07 963 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 SLC26A11Q86WA9 606 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 CTAGE3PQ8IX95 158 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 SLC22A18ASQ8N1D0 253 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 PNPLA1Q8N8W4 532 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 UHMK1Q8TAS1 419 aaKnown RBP15.6■□□□□ 0.09
USP40-206ENST00000443711 CCDC77Q9BR77 488 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 ACSS3Q9H6R3 686 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 RMI1Q9H9A7 625 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 SMYD2Q9NRG4 433 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 FAM86C1Q9NVL1 165 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 KLQ9UEF7 1012 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 MOSPD1Q9UJG1 213 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 GMEB2Q9UKD1 530 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 SLC6A14Q9UN76 642 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 SLC17A4Q9Y2C5 497 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 ANKRD6Q9Y2G4 727 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 MUC6Q6W4X9 2439 aa15.6■□□□□ 0.09
USP40-206ENST00000443711 CXorf49A8MYA2 514 aaPredicted RBP15.59■□□□□ 0.09
USP40-206ENST00000443711 F8W8V4 182 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 PRMT5O14744 637 aaPredicted RBP15.59■□□□□ 0.09
USP40-206ENST00000443711 NUAK1O60285 661 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 AP2A2O94973 939 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 C1QAP02745 245 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 IVLP07476 585 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 ZNF8P17098 575 aaPredicted RBP15.59■□□□□ 0.09
USP40-206ENST00000443711 POLD2P49005 469 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 SRP54P61011 504 aaKnown RBP15.59■□□□□ 0.09
USP40-206ENST00000443711 B4GALNT1Q00973 533 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 SLC29A2Q14542 456 aa15.59■□□□□ 0.09
USP40-206ENST00000443711 KLHL38Q2WGJ6 581 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms