RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 GFI1Q99684 422 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 PPIL3Q9H2H8 161 aaKnown RBP3.47□□□□□ -1.85
VPS41-207ENST00000439468 DNAJC18Q9H819 358 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 C17orf75Q9HAS0 396 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 TXLNGQ9NUQ3 528 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 TSPYL4Q9UJ04 414 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 FBXW11Q9UKB1 542 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 ACSL5Q9ULC5 683 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 KLHL20Q9Y2M5 609 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 TTLL3Q9Y4R7 772 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 PCDHGA5Q9Y5G8 931 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 FAM169AQ9Y6X4 670 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 CKAP5Q14008 2032 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 TAF1P21675 1872 aa3.47□□□□□ -1.85
VPS41-207ENST00000439468 RB1CC1Q8TDY2 1594 aa3.46□□□□□ -1.85
VPS41-207ENST00000439468 PDS5AQ29RF7 1337 aaKnown RBP3.46□□□□□ -1.85
VPS41-207ENST00000439468 ATXN2Q99700 1313 aaKnown RBP3.46□□□□□ -1.85
VPS41-207ENST00000439468 CCDC180Q9P1Z9 1646 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 PLSCR5A0PG75 271 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 LRRC72A6NJI9 287 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 SRRM3A6NNA2 597 aaPredicted RBP3.46□□□□□ -1.86
VPS41-207ENST00000439468 SPINT2O43291 252 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 KCNJ13O60928 360 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 KDM4BO94953 1096 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 FCGR1AP12314 374 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 HRH2P25021 359 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 STAT2P52630 851 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 CLDN20P56880 219 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 TAS2R38P59533 333 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 CD81P60033 236 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 ISL1P61371 349 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 ZBED6P86452 979 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 TFAP4Q01664 338 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 FOXM1Q08050 763 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 MYBPHQ13203 477 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 SLC39A14Q15043 492 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 CTF1Q16619 201 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 NTRK2Q16620 822 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 MYLK3Q32MK0 819 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 PPP6R3Q5H9R7 873 aaPredicted RBP3.46□□□□□ -1.86
VPS41-207ENST00000439468 DCST1Q5T197 706 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 C18orf63Q68DL7 685 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 GPR139Q6DWJ6 353 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 KCTD18Q6PI47 426 aaPredicted RBP3.46□□□□□ -1.86
VPS41-207ENST00000439468 RAD9BQ6WBX8 426 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 CACNA2D4Q7Z3S7 1137 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 APPL2Q8NEU8 664 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 SPATA22Q8NHS9 363 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 CDRT15Q96T59 188 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 DDOQ99489 341 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 SH3GL2Q99962 352 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 SEMA3CQ99985 751 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 APOL6Q9BWW8 343 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 TEX12Q9BXU0 123 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 GIMAP4Q9NUV9 329 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 C1RLQ9NZP8 487 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 STK39Q9UEW8 545 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 LOXL2Q9Y4K0 774 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 EVPLQ92817 2033 aa3.46□□□□□ -1.86
VPS41-207ENST00000439468 A0A0U1RQJ8 604 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 DENND3A2RUS2 1198 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 CLEC18AA5D8T8 446 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 EIF4E1BA6NMX2 242 aaKnown RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 FAM90A26D6RGX4 464 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 J3QR06 171 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 ANKRD28O15084 1053 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 SMAD9O15198 467 aaKnown RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 MID1O15344 667 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 ZNF217O75362 1048 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 AVILO75366 819 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 DAB1O75553 588 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 PSMD10O75832 226 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 CAMTA2O94983 1202 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 HSP90AA1P07900 732 aaKnown RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 DDX5P17844 614 aaKnown RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 NMBRP28336 390 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 CORO1AP31146 461 aaKnown RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 PNLIPRP2P54317 469 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 UBXN2AP68543 259 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 IRX6P78412 446 aaPredicted RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 ZNF155Q12901 538 aaPredicted RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 GRAPQ13588 217 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 TNFAIP1Q13829 316 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 DECR1Q16698 335 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 CCDC96Q2M329 555 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 TMEM266Q2M3C6 531 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 LCN10Q6JVE6 187 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 KRTAP5-11Q6L8G4 156 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 C8orf82Q6P1X6 216 aaPredicted RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 PRSS57Q6UWY2 283 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 Q6ZTC4 211 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 PLPPR4Q7Z2D5 763 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 RBM23Q86U06 439 aaKnown RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 SATL1Q86VE3 508 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 TICAM2Q86XR7 235 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 DNAAF5Q86Y56 855 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 ARID3BQ8IVW6 561 aaPredicted RBP3.45□□□□□ -1.86
VPS41-207ENST00000439468 ODF3L1Q8IXM7 274 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 ZNF114Q8NC26 417 aa3.45□□□□□ -1.86
VPS41-207ENST00000439468 CLEC18CQ8NCF0 446 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms