RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 ZNF398Q8TD17 642 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 CCDC97Q96F63 343 aaPredicted RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 APOLD1Q96LR9 279 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 SERPINB12Q96P63 405 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 C19orf43Q9BQ61 176 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 DUSP23Q9BVJ7 150 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 GSDMCQ9BYG8 508 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 IL22Q9GZX6 179 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 FAM96AQ9H5X1 160 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 TRIM39Q9HCM9 518 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 TRNAU1APQ9NX07 287 aaKnown RBP12.34□□□□□ -0.43
SKA1-203ENST00000417656 BFARQ9NZS9 450 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 SIRPGQ9P1W8 387 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 ZNHIT2Q9UHR6 403 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 CDC23Q9UJX2 597 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 ST14Q9Y5Y6 855 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 SLC30A1Q9Y6M5 507 aa12.34□□□□□ -0.43
SKA1-203ENST00000417656 LY6G6EA0A0G2JKS1 128 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 CCDC162PA2VCL2 907 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 B4DGG1 531 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 H7C0S8 307 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 KIF2AO00139 706 aaPredicted RBP12.33□□□□□ -0.44
SKA1-203ENST00000417656 AP3B1O00203 1094 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 TPP1O14773 563 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 TNFSF14O43557 240 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 AVILO75366 819 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 FTH1P19P0C7X4 201 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 ACP5P13686 325 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 PSMA3P25788 255 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 AKT1P31749 480 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 ACTR1BP42025 376 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 CDKN1CP49918 316 aaPredicted RBP12.33□□□□□ -0.44
SKA1-203ENST00000417656 ACTR1AP61163 376 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 SARNPP82979 210 aaKnown RBP12.33□□□□□ -0.44
SKA1-203ENST00000417656 DAB2P98082 770 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 CTBSQ01459 385 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 CKAP4Q07065 602 aaKnown RBP12.33□□□□□ -0.44
SKA1-203ENST00000417656 LAMB3Q13751 1172 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 GTF2H3Q13889 308 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 SKIDA1Q1XH10 827 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 CCDC157Q569K6 752 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 ZRANB3Q5FWF4 1079 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 PCID2Q5JVF3 399 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 LDLRAP1Q5SW96 308 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 SLC30A9Q6PML9 568 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 ZNF572Q7Z3I7 529 aaPredicted RBP12.33□□□□□ -0.44
SKA1-203ENST00000417656 SNX20Q7Z614 316 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 NRROSQ86YC3 692 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 SFTPA2Q8IWL1 248 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 SLC35F3Q8IY50 421 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 NXPE1Q8N323 547 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 MPP5Q8N3R9 675 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 MCUQ8NE86 351 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 GPBAR1Q8TDU6 330 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 NAT14Q8WUY8 206 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 ULK4Q96C45 1275 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 CDKN2AIPNLQ96HQ2 116 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 TRIM31Q9BZY9 425 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 ZCCHC2Q9C0B9 1178 aaKnown RBP12.33□□□□□ -0.44
SKA1-203ENST00000417656 RMI1Q9H9A7 625 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 XAB2Q9HCS7 855 aaKnown RBP12.33□□□□□ -0.44
SKA1-203ENST00000417656 CHRAC1Q9NRG0 131 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 TOR4AQ9NXH8 423 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 GPR34Q9UPC5 381 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 KCNK6Q9Y257 313 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 U3KQA8 63 aa12.33□□□□□ -0.44
SKA1-203ENST00000417656 CNOT1A5YKK6 2376 aaKnown RBP12.33□□□□□ -0.44
SKA1-203ENST00000417656 GPR89AB7ZAQ6 455 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 CHUKO15111 745 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 GRID2O43424 1007 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 RAD51CO43502 376 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 VEGFDO43915 354 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 CDK14O94921 469 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 GOT2P00505 430 aaKnown RBP12.32□□□□□ -0.44
SKA1-203ENST00000417656 GPR89BP0CG08 455 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 MLNP12872 115 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 MSH3P20585 1137 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 IVDP26440 423 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 NMBRP28336 390 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 FOXN2P32314 431 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 NPY2RP49146 381 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 ACADVLP49748 655 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 CTSCP53634 463 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 ACVR1Q04771 509 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 CACNG1Q06432 222 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 TMEM115Q12893 351 aaPredicted RBP12.32□□□□□ -0.44
SKA1-203ENST00000417656 LRP8Q14114 963 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 WHAMMP3Q1A5X7 153 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 AFTPHQ6ULP2 937 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 DET1Q7L5Y6 550 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 CHST15Q7LFX5 561 aaPredicted RBP12.32□□□□□ -0.44
SKA1-203ENST00000417656 NLRP9Q7RTR0 991 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 LRRTM4Q86VH4 590 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 TRAPPC5Q8IUR0 188 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 PIANPQ8IYJ0 282 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 AGGF1Q8N302 714 aaeCLIP12.32□□□□□ -0.44
SKA1-203ENST00000417656 ARL10Q8N8L6 244 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 RASGEF1AQ8N9B8 481 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 FAM181AQ8N9Y4 354 aa12.32□□□□□ -0.44
SKA1-203ENST00000417656 FAM46DQ8NEK8 389 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms