RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 RALGPS1Q5JS13 557 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 PPP1R15BQ5SWA1 713 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 ARHGAP36Q6ZRI8 547 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 USP45Q70EL2 814 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 MON1BQ7L1V2 547 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 SYVN1Q86TM6 617 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 TSPAN33Q86UF1 283 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 AP2M1Q96CW1 435 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 C9orf72Q96LT7 481 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 NUDCD1Q96RS6 583 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 PCDHB18PQ96TA0 734 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 BRD8Q9H0E9 1235 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 GANQ9H2C0 597 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 UCK1Q9HA47 277 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 VPS18Q9P253 973 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 CNOT8Q9UFF9 292 aaKnown RBP9.3□□□□□ -0.92
NEDD9-203ENST00000397378 TBC1D29Q9UFV1 150 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 AP4E1Q9UPM8 1137 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 NTNG1Q9Y2I2 539 aa9.3□□□□□ -0.92
NEDD9-203ENST00000397378 MDC1Q14676 2089 aaKnown RBP9.3□□□□□ -0.92
NEDD9-203ENST00000397378 PIKFYVEQ9Y2I7 2098 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 SSU72P8A0A1W2PR75 194 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 TTC24A2A3L6 582 aaPredicted RBP9.29□□□□□ -0.92
NEDD9-203ENST00000397378 DFFAO00273 331 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 PES1O00541 588 aaKnown RBP9.29□□□□□ -0.92
NEDD9-203ENST00000397378 TMEM63AO94886 807 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 PGLSO95336 258 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 F3P13726 295 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 ZNF30P17039 623 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 DESP17661 470 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 ERCC2P18074 760 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 TNFAIP3P21580 790 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 HTR1EP28566 365 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 PTPN4P29074 926 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 SEPHS1P49903 392 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 JAM2P57087 298 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 SH3BP2P78314 561 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 TRAF2Q12933 501 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 ZNF235Q14590 738 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 KYNUQ16719 465 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 CLEC16AQ2KHT3 1053 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 LYPLAL1Q5VWZ2 237 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 HGSNATQ68CP4 663 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 DNAJC24Q6P3W2 148 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 RFLNAQ6ZTI6 216 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 RFX8Q6ZV50 586 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 MARK2Q7KZI7 788 aaKnown RBP9.29□□□□□ -0.92
NEDD9-203ENST00000397378 TRIM74Q86UV6 250 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 PARP9Q8IXQ6 854 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 RAVER1Q8IY67 606 aaKnown RBP9.29□□□□□ -0.92
NEDD9-203ENST00000397378 PGBD5Q8N414 524 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 NPWQ8N729 165 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 EXD1Q8NHP7 514 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 FNIP1Q8TF40 1166 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 SCAMP4Q969E2 229 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 MCEEQ96PE7 176 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 SMAD5Q99717 465 aaKnown RBP9.29□□□□□ -0.92
NEDD9-203ENST00000397378 MGME1Q9BQP7 344 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 TBC1D10AQ9BXI6 508 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 GPR87Q9BY21 358 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 VPS16Q9H269 839 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 DHX35Q9H5Z1 703 aaKnown RBP9.29□□□□□ -0.92
NEDD9-203ENST00000397378 RMI1Q9H9A7 625 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 NOD2Q9HC29 1040 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 GPATCH2LQ9NWQ4 482 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 CPNE7Q9UBL6 633 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 ZNHIT2Q9UHR6 403 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 CD84Q9UIB8 345 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 PKDREJQ9NTG1 2253 aa9.29□□□□□ -0.92
NEDD9-203ENST00000397378 ZGRF1Q86YA3 2104 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 DAPK3O43293 454 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 SPAG6O75602 509 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 ASMTLO95671 621 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 PEX11BO96011 259 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 FGF5P12034 268 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 HCAR3P49019 387 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 CLCNKAP51800 687 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 ZNF135P52742 658 aaPredicted RBP9.28□□□□□ -0.92
NEDD9-203ENST00000397378 GFERP55789 205 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 UBE2IP63279 158 aaKnown RBP9.28□□□□□ -0.92
NEDD9-203ENST00000397378 OGDHQ02218 1023 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 PTSQ03393 145 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 PTPRRQ15256 657 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 CA9Q16790 459 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.28□□□□□ -0.92
NEDD9-203ENST00000397378 ERMARDQ5T6L9 678 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 ARMC12Q5T9G4 340 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 LRRC66Q68CR7 880 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 CYB5D1Q6P9G0 228 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 FAM199XQ6PEV8 388 aaPredicted RBP9.28□□□□□ -0.92
NEDD9-203ENST00000397378 BNC2Q6ZN30 1099 aaPredicted RBP9.28□□□□□ -0.92
NEDD9-203ENST00000397378 TAOK1Q7L7X3 1001 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 CHST15Q7LFX5 561 aaPredicted RBP9.28□□□□□ -0.92
NEDD9-203ENST00000397378 KCNMB4Q86W47 210 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 PSTKQ8IV42 348 aaKnown RBP9.28□□□□□ -0.92
NEDD9-203ENST00000397378 ZNF295-AS1Q8N0V1 137 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 NDUFAF2Q8N183 169 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 PIH1D2Q8WWB5 315 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 OGFRQ9NZT2 677 aa9.28□□□□□ -0.92
NEDD9-203ENST00000397378 PCYT1BQ9Y5K3 369 aaPredicted RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms