RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ZDHHC24Q6UX98 284 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 DEF8Q6ZN54 512 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 FAM220AQ7Z4H9 259 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 C17orf64Q86WR6 236 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 OR6K2Q8NGY2 324 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 HM13Q8TCT9 377 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 LMAN2LQ9H0V9 348 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 ACSS2Q9NR19 701 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 POMPQ9Y244 141 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 RAI2Q9Y5P3 530 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CACNA1FO60840 1977 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 SCN11AQ9UI33 1791 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 SLC28A2O43868 658 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 TCEA3O75764 348 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CAPN15O75808 1086 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 FGBP02675 491 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 ELFN1P0C7U0 828 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 WDR4P57081 412 aaKnown RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 C6orf52Q5T4I8 152 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 FAM46CQ5VWP2 391 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CLEC6AQ6EIG7 209 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 PLET1Q6UQ28 207 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 PARP8Q8N3A8 854 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 PIH1D2Q8WWB5 315 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 SPACA7Q96KW9 195 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 KIFC1Q9BW19 673 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 RASSF1Q9NS23 344 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 IFT80Q9P2H3 777 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CCDC162PA2VCL2 907 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 E9PAM4 449 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 RGS10O43665 173 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 CDK14O94921 469 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 AMD1P17707 334 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 IGFBP5P24593 272 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 PEX2P28328 305 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 PPM1AP35813 382 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 SSR2P43308 183 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 LGALS3BPQ08380 585 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 TRMT10BQ6PF06 316 aaKnown RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 PEG10Q86TG7 708 aaKnown RBP11.36□□□□□ -0.59
PTPRF-203ENST00000372407 SLC51AQ86UW1 340 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 C1GALT1C1Q96EU7 318 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 ALG2Q9H553 416 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 C3orf14Q9HBI5 128 aa11.36□□□□□ -0.59
PTPRF-203ENST00000372407 GLYATL1P3A0A0U1RQE8 302 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 ANGPTL1O95841 491 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 ZNF24P17028 368 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 FOXN2P32314 431 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 SLC5A3P53794 718 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 LILRA4P59901 499 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 DSC2Q02487 901 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 SULT2A1Q06520 285 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 ZDHHC20Q5W0Z9 365 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 LDB1Q86U70 411 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-203ENST00000372407 CD99L2Q8TCZ2 262 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 AHCYL2Q96HN2 611 aaKnown RBP11.35□□□□□ -0.59
PTPRF-203ENST00000372407 AGAP2Q99490 1192 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 TPK1Q9H3S4 243 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 ZDHHC18Q9NUE0 388 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 COL20A1Q9P218 1284 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 SLC27A6Q9Y2P4 619 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 AFDNP55196 1824 aaKnown RBP11.35□□□□□ -0.59
PTPRF-203ENST00000372407 LRRC14BA6NHZ5 514 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 LOC110117498-PIK3R3F6TDL0 507 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 PLK4O00444 970 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 SLC7A4O43246 635 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 UROSP10746 265 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 ITPKAP23677 461 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 GALK1P51570 392 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 TSTD2Q5T7W7 516 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 CCDC185Q8N715 623 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 BEND7Q8N7W2 519 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-203ENST00000372407 SLC35B2Q8TB61 432 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 ROPN1LQ96C74 230 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 CXorf21Q9HAI6 301 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 NEK6Q9HC98 313 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 EXD2Q9NVH0 621 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 MIOSQ9NXC5 875 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 DTLQ9NZJ0 730 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 COMMD9Q9P000 198 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 GMIPQ9P107 970 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 FAM149AA5PLN7 773 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 NT5C1B-RDH14C9J2C7 533 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 BCKDKO14874 412 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 ZW10O43264 779 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 GABRR2P28476 465 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 CCL23P55773 120 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 AGMOQ6ZNB7 445 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 PYROXD2Q8N2H3 581 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 DCBLD1Q8N8Z6 715 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 TMEM138Q9NPI0 162 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 EIF2B3Q9NR50 452 aaKnown RBP11.35□□□□□ -0.59
PTPRF-203ENST00000372407 AASDHPPTQ9NRN7 309 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 TRMT13Q9NUP7 481 aaKnown RBP11.35□□□□□ -0.59
PTPRF-203ENST00000372407 INTS7Q9NVH2 962 aaKnown RBP11.35□□□□□ -0.59
PTPRF-203ENST00000372407 ING4Q9UNL4 249 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 ZNF510Q9Y2H8 683 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 SH3GLB1Q9Y371 365 aa11.35□□□□□ -0.59
PTPRF-203ENST00000372407 A0A1W2PQ67 120 aa11.34□□□□□ -0.59
PTPRF-203ENST00000372407 IRGMA1A4Y4 181 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms