RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 MYH9P35579 1960 aaKnown RBP13.8□□□□□ -0.2
COL6A1-201ENST00000361866 G3V2L1 256 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 SOCS2O14508 198 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 AURKAO14965 403 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 TBX1O43435 398 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 DENRO43583 198 aaKnown RBP13.8□□□□□ -0.2
COL6A1-201ENST00000361866 OTCP00480 354 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 COL6A1P12109 1028 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 ARSAP15289 507 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 MAPK1P28482 360 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 FMO3P31513 532 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 CRATP43155 626 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 POLD2P49005 469 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 SLC16A1P53985 500 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 MED22Q15528 200 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 INO80DQ53TQ3 878 aaPredicted RBP13.8□□□□□ -0.2
COL6A1-201ENST00000361866 BRMS1LQ5PSV4 323 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 LINGO4Q6UY18 593 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 TMEM135Q86UB9 458 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 ZC3H7AQ8IWR0 971 aaKnown RBP13.8□□□□□ -0.2
COL6A1-201ENST00000361866 APOLD1Q96LR9 279 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 MUS81Q96NY9 551 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 NSUN5Q96P11 429 aaKnown RBP13.8□□□□□ -0.2
COL6A1-201ENST00000361866 GMLQ99445 158 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 ELOVL7A1L3X0 281 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 J3KR12 359 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 SLC22A2O15244 555 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 CYP7B1O75881 506 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 ZNF12P17014 697 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 WEE1P30291 646 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 GRK4P32298 578 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 GJA8P48165 433 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 IRF8Q02556 426 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 MYBPC3Q14896 1274 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 INTS6LQ5JSJ4 861 aaKnown RBP13.8□□□□□ -0.2
COL6A1-201ENST00000361866 DGKKQ5KSL6 1271 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 AFTPHQ6ULP2 937 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 SMYD1Q8NB12 490 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 GPR156Q8NFN8 814 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 NLGN2Q8NFZ4 835 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 ARNTL2Q8WYA1 636 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 PROX1Q92786 737 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 TMBIM1Q969X1 311 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 FCRL5Q96RD9 977 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 SMURF2Q9HAU4 748 aa13.8□□□□□ -0.2
COL6A1-201ENST00000361866 RPP40O75818 363 aaKnown RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 MMP3P08254 477 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 IL12AP29459 219 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 ALDH9A1P49189 494 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 HMGCS1Q01581 520 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 TOP3AQ13472 1001 aaPredicted RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 DNASE1L3Q13609 305 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 FOXB2Q5VYV0 432 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 TRIM69Q86WT6 500 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 OLIG1Q8TAK6 271 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 RAB2BQ8WUD1 216 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 TMEM245Q9H330 911 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 SMOXQ9NWM0 555 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 HERVK_113P63132 956 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 GRB7Q14451 532 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 PAFAH1B3Q15102 231 aaKnown RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 MEP1AQ16819 746 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 C6orf183Q5T699 404 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 SIDT2Q8NBJ9 832 aaKnown RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 OR52J3Q8NH60 311 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 ERVK-6Q9BXR3 956 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 LMCD1Q9NZU5 365 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 PDP1Q9P0J1 537 aaPredicted RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 LSM7Q9UK45 103 aaKnown RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 A0A1W2PQ67 120 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 H3BNH8 94 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 NDUFS2O75306 463 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 NIPSNAP2O75323 286 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 CDK4P11802 303 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 AZGP1P25311 298 aaKnown RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 ALDH6A1Q02252 535 aaKnown RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 P2RY8Q86VZ1 359 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 GATAD2AQ86YP4 633 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 CENPSQ8N2Z9 138 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 NPWQ8N729 165 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 WDR12Q9GZL7 423 aaKnown RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 OCEL1Q9H607 264 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 TRPM5Q9NZQ8 1165 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 MYH14Q7Z406 1995 aaKnown RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 CDC7O00311 574 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 GRID2O43424 1007 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 PGLSO95336 258 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 HNRNPDQ14103 355 aaKnown RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 DUSP28Q4G0W2 176 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 SPATA19Q7Z5L4 167 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 ADAMTSL2Q86TH1 951 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 BBS7Q8IWZ6 715 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 LEMD2Q8NC56 503 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 MTMR14Q8NCE2 650 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 FAR1Q8WVX9 515 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 GMIPQ9P107 970 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 RBPJLQ9UBG7 517 aa13.79□□□□□ -0.2
COL6A1-201ENST00000361866 ZNF490Q9ULM2 529 aaPredicted RBP13.79□□□□□ -0.2
COL6A1-201ENST00000361866 NT5C1B-RDH14C9J2C7 533 aa13.78□□□□□ -0.2
COL6A1-201ENST00000361866 DIRAS1O95057 198 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms