RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 TYRO3Q06418 890 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 SEMA5AQ13591 1074 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 DNASE1L3Q13609 305 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 BEND6Q5SZJ8 279 aaPredicted RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 MICALCLQ6ZW33 695 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 ARCQ7LC44 396 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 STRADAQ7RTN6 431 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 LYSMD3Q7Z3D4 306 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 HSD11B1LQ7Z5J1 315 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 NOP9Q86U38 636 aaKnown RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 SFRP1Q8N474 314 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 NTAN1Q96AB6 310 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 ECHDC3Q96DC8 303 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 DTD2Q96FN9 168 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 TCTN2Q96GX1 697 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 ANKRD27Q96NW4 1050 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 OR6C1Q96RD1 312 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 C11orf70Q9BRQ4 267 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 TBC1D10AQ9BXI6 508 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 SP110Q9HB58 689 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 PDFQ9HBH1 243 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 SLC24A3Q9HC58 644 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 ACSS2Q9NR19 701 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 CNOT8Q9UFF9 292 aaKnown RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.09□□□□□ -0.63
RTN3-204ENST00000354497 CD84Q9UIB8 345 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 CORO1CQ9ULV4 474 aaPredicted RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 PRKAB1Q9Y478 270 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 C2CD4BA6NLJ0 364 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 LRCH4O75427 683 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 SORBS2O94875 1100 aaKnown RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 HEXIM1O94992 359 aaKnown RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 FERP16591 822 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 PTPN9P43378 593 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 CSNK1DP48730 415 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 PAPOLAP51003 745 aaKnown RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 CLNS1AP54105 237 aaKnown RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 GFERP55789 205 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 NOMO3P69849 1222 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 SH3BP2P78314 561 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 ROR2Q01974 943 aaKnown RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 NR6A1Q15406 480 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 Q6ZVL8 140 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 TP53INP2Q8IXH6 220 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 UMODL1-AS1Q8N2C9 162 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 CT55Q8WUE5 264 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 SH3KBP1Q96B97 665 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 C5orf34Q96MH7 638 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 TRIM7Q9C029 511 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 CBX8Q9HC52 389 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 SIDT1Q9NXL6 827 aaKnown RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 VPS18Q9P253 973 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 ZNHIT2Q9UHR6 403 aa11.09□□□□□ -0.63
RTN3-204ENST00000354497 ZNF106Q9H2Y7 1883 aaKnown RBP11.09□□□□□ -0.63
RTN3-204ENST00000354497 CACNA1DQ01668 2161 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 ITPR2Q14571 2701 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 ARHGAP10A1A4S6 786 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 GTPBP10A4D1E9 387 aaKnown RBP11.08□□□□□ -0.64
RTN3-204ENST00000354497 ARHGAP42A6NI28 874 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 DFFAO00273 331 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 FGF10O15520 208 aaPredicted RBP11.08□□□□□ -0.64
RTN3-204ENST00000354497 LDLRP01130 860 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 CYP2A6P11509 494 aaPredicted RBP11.08□□□□□ -0.64
RTN3-204ENST00000354497 GPD1P21695 349 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 TPI1P60174 286 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 RPS18P62269 152 aaKnown RBP11.08□□□□□ -0.64
RTN3-204ENST00000354497 PYCR3Q53H96 274 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 CHST15Q7LFX5 561 aaPredicted RBP11.08□□□□□ -0.64
RTN3-204ENST00000354497 SLC9B2Q86UD5 537 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 PLXDC1Q8IUK5 500 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 THOC1Q96FV9 657 aaKnown RBP11.08□□□□□ -0.64
RTN3-204ENST00000354497 RSRC1Q96IZ7 334 aaKnown RBP11.08□□□□□ -0.64
RTN3-204ENST00000354497 TGM7Q96PF1 710 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 SELENOOQ9BVL4 669 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 SLC39A8Q9C0K1 460 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 ACTL8Q9H568 366 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 SARS2Q9NP81 518 aaKnown RBP11.08□□□□□ -0.64
RTN3-204ENST00000354497 KCTD5Q9NXV2 234 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 KCNK6Q9Y257 313 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 PCDHGC4Q9Y5F7 938 aa11.08□□□□□ -0.64
RTN3-204ENST00000354497 TNRC6AQ8NDV7 1962 aaKnown RBP11.07□□□□□ -0.64
RTN3-204ENST00000354497 ARHGEF17Q96PE2 2063 aaPredicted RBP11.07□□□□□ -0.64
RTN3-204ENST00000354497 GOLGA6L10A6NI86 522 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 USP27XA6NNY8 438 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 WASH4PA8MWX3 477 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 TRAFD1O14545 582 aaPredicted RBP11.07□□□□□ -0.64
RTN3-204ENST00000354497 KRT86O43790 486 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 KRT3P12035 628 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 TYRP1P17643 537 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 CTPS1P17812 591 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 TNFAIP3P21580 790 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 LHCGRP22888 699 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 NFKBIAP25963 317 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 GARSP41250 739 aaKnown RBP11.07□□□□□ -0.64
RTN3-204ENST00000354497 EPHA4P54764 986 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 AP1S1P61966 158 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 LRP8Q14114 963 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 PTPRRQ15256 657 aa11.07□□□□□ -0.64
RTN3-204ENST00000354497 E4F1Q66K89 784 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms