RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 NUS1Q96E22 293 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 FANCEQ9HB96 536 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 IL23AQ9NPF7 189 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 SRRM3A6NNA2 597 aaPredicted RBP14.79□□□□□ -0.04
COL17A1-201ENST00000353479 GNPDA1P46926 289 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 TAS2R39P59534 338 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 CCDC142Q17RM4 750 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 SIRPB2Q5JXA9 342 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 LDLRAP1Q5SW96 308 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 TWIST2Q8WVJ9 160 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 ELAC1Q9H777 363 aaKnown RBP14.79□□□□□ -0.04
COL17A1-201ENST00000353479 LRTM1Q9HBL6 345 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 ZDHHC4Q9NPG8 344 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 PDP2Q9P2J9 529 aa14.79□□□□□ -0.04
COL17A1-201ENST00000353479 UBXN8O00124 270 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 UGT1A9O60656 530 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 UGT1A6P19224 532 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 UGT1A1P22309 533 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 UGT1A4P22310 534 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 AKT2P31751 481 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 UGT1A3P35503 534 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 UGT1A5P35504 534 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 GTF2H2Q13888 395 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 GTF2H2CQ6P1K8 395 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 SNX20Q7Z614 316 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 NAT8LQ8N9F0 302 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 OR2AP1Q8NGE2 309 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 C9orf16Q9BUW7 83 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 RSPH9Q9H1X1 276 aaPredicted RBP14.78□□□□□ -0.04
COL17A1-201ENST00000353479 VRTNQ9H8Y1 702 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 UGT1A7Q9HAW7 530 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 UGT1A10Q9HAW8 530 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 UGT1A8Q9HAW9 530 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 CCDC177Q9NQR7 707 aaPredicted RBP14.78□□□□□ -0.04
COL17A1-201ENST00000353479 SLC17A6Q9P2U8 582 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 CORO2BQ9UQ03 480 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 NWD2Q9ULI1 1742 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 GABRDO14764 452 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 PEX1O43933 1283 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 VAV1P15498 845 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 IFNGR2P38484 337 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 GRM2Q14416 872 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 LSM12Q3MHD2 195 aaKnown RBP14.78□□□□□ -0.04
COL17A1-201ENST00000353479 ARL13AQ5H913 290 aaPredicted RBP14.78□□□□□ -0.04
COL17A1-201ENST00000353479 ANXA8L1Q5VT79 327 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 LCN9Q8WX39 176 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 PEBP4Q96S96 227 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 EBF3Q9H4W6 596 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 ITGB4P16144 1822 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 hCG_2014768A0A024R1R8 64 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 PRR5-ARHGAP8B1AHC4 643 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 WNT9AO14904 365 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 BEST1O76090 585 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 TRBC1P01850 177 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 MANFP55145 182 aaKnown RBP14.78□□□□□ -0.04
COL17A1-201ENST00000353479 ARHGAP8P85298 464 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 CCNYL2Q5T2Q4 361 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 LRRC74BQ6ZQY2 392 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 TSTD1Q8NFU3 115 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 OR10T2Q8NGX3 314 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 TBC1D10AQ9BXI6 508 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 INTS10Q9NVR2 710 aaKnown RBP14.78□□□□□ -0.04
COL17A1-201ENST00000353479 AP4S1Q9Y587 144 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 MEIS3P2A8K0S8 358 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 NRG1Q02297 640 aaPredicted RBP14.78□□□□□ -0.04
COL17A1-201ENST00000353479 NCF4Q15080 339 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 ADHFE1Q8IWW8 467 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 SLC22A17Q8WUG5 538 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 DLG3Q92796 817 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 FIZ1Q96SL8 496 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 NPAS2Q99743 824 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 MAP10Q9P2G4 905 aa14.78□□□□□ -0.04
COL17A1-201ENST00000353479 GNEQ9Y223 722 aaKnown RBP14.78□□□□□ -0.04
COL17A1-201ENST00000353479 PSMG1O95456 288 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 UQCRBP14927 111 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 CPTPQ5TA50 214 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 TMCO2Q7Z6W1 182 aaPredicted RBP14.77□□□□□ -0.04
COL17A1-201ENST00000353479 ESAMQ96AP7 390 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 PIWIL1Q96J94 861 aaKnown RBP14.77□□□□□ -0.04
COL17A1-201ENST00000353479 MCMBPQ9BTE3 642 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 RPS6KA6Q9UK32 745 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.77□□□□□ -0.04
COL17A1-201ENST00000353479 A0A0J9YYE9 177 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 TRIM38O00635 465 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 DGKEP52429 567 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 TYW3Q6IPR3 259 aaKnown RBP14.77□□□□□ -0.04
COL17A1-201ENST00000353479 GK5Q6ZS86 529 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 LYSMD3Q7Z3D4 306 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 LMLNQ96KR4 655 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 TTLL2Q9BWV7 592 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 HAPLN2Q9GZV7 340 aa14.77□□□□□ -0.04
COL17A1-201ENST00000353479 MRPS33Q9Y291 106 aaKnown RBP14.77□□□□□ -0.04
COL17A1-201ENST00000353479 COCHO43405 550 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 CDH5P33151 784 aaPredicted RBP14.77□□□□□ -0.05
COL17A1-201ENST00000353479 GSTA3Q16772 222 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 FSTL5Q8N475 847 aaPredicted RBP14.77□□□□□ -0.05
COL17A1-201ENST00000353479 APOL4Q9BPW4 351 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 RIOK2Q9BVS4 552 aaKnown RBP14.77□□□□□ -0.05
COL17A1-201ENST00000353479 OSER1Q9NX31 292 aa14.77□□□□□ -0.05
COL17A1-201ENST00000353479 FNIP2Q9P278 1114 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms