RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ZNF431Q8TF32 576 aaPredicted RBP4.82□□□□□ -1.64
CSMD3-201ENST00000297405 FIG4Q92562 907 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 MARK1Q9P0L2 795 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 OTOGLQ3ZCN5 2332 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 ZCCHC11Q5TAX3 1644 aaKnown RBP4.82□□□□□ -1.64
CSMD3-201ENST00000297405 XDHP47989 1333 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 A0A1B0GVM2 712 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 NAP1L6A6NFF2 107 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 MT-CO2P00403 227 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 ITGA3P26006 1051 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 HTR7P34969 479 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 CAV3P56539 151 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 SEMA5AQ13591 1074 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 ARL6IP1Q15041 203 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 CDO1Q16878 200 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 LIX1Q8N485 282 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 ARL6IP6Q8N6S5 226 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF709Q8N972 641 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 ZSCAN1Q8NBB4 408 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 SNX33Q8WV41 574 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 SEPHS2Q99611 448 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 OR10A4Q9H209 315 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 MRPL22Q9NWU5 206 aaKnown RBP4.82□□□□□ -1.64
CSMD3-201ENST00000297405 MAFFQ9ULX9 164 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 NR2E3Q9Y5X4 410 aa4.82□□□□□ -1.64
CSMD3-201ENST00000297405 FAM230AA0A1W2PPH8 454 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 C9IYK1 514 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 USP17L12C9JPN9 530 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 USP17L21D6R901 530 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 NRP2O60462 931 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 SLC19A2O60779 497 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 BANF1O75531 89 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 GABBR2O75899 941 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 CYB5AP00167 134 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 RPL17P18621 184 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 GSTM3P21266 225 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 EN1Q05925 392 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 SEC23AQ15436 765 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 HSDL1Q3SXM5 330 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 KLHL26Q53HC5 615 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 COL13A1Q5TAT6 717 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 TRMT1LQ7Z2T5 733 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 RASGEF1AQ8N9B8 481 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 LRRC57Q8N9N7 239 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 RADILQ96JH8 1075 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 COPS4Q9BT78 406 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 OAS3Q9Y6K5 1087 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 USP6P35125 1406 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 SCGB2A1O75556 95 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 FGRP09769 529 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 ACTBP60709 375 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 DSTNP60981 165 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 ARF3P61204 181 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 ACTG1P63261 375 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 ARF1P84077 181 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 SNRNP35Q16560 246 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 EXOC3L2Q2M3D2 409 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 CARD16Q5EG05 197 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 MFSD14BQ5SR56 506 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 SAMD14Q8IZD0 417 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 OR52K1Q8NGK4 314 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 SLC7A14Q8TBB6 771 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 JPH3Q8WXH2 748 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 LIN37Q96GY3 246 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 TBC1D17Q9HA65 648 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 PI4KBQ9UBF8 816 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF99A8MXY4 864 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 CTSKP43235 329 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 FLI1Q01543 452 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 VEPH1Q14D04 833 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 ZMAT1Q5H9K5 638 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 RPL13AP3Q6NVV1 102 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 PLEKHG7Q6ZR37 379 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 CYB5R4Q7L1T6 521 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 OOSP2Q86WS3 158 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 TRNT1Q96Q11 434 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 CPXM1Q96SM3 734 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 C1QTNF7Q9BXJ2 289 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 NUSAP1Q9BXS6 441 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 NIF3L1Q9GZT8 377 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 QRSL1Q9H0R6 528 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 FAM208AQ9UK61 1670 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 EIF4E1BA6NMX2 242 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 ITGA4P13612 1032 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 CRHR1P34998 444 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 RNASEH2BQ5TBB1 312 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 TBC1D16Q8TBP0 767 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 RIPOR3Q96MK2 946 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 MCEEQ96PE7 176 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 RAD9AQ99638 391 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 A0A0A0MRY4 1105 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 RIIAD1A6NNX1 92 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 ATG12O94817 140 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 PAPSS2O95340 614 aaPredicted RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 HNRNPH3P31942 346 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 RPL9P32969 192 aaKnown RBP4.81□□□□□ -1.64
CSMD3-201ENST00000297405 DPPA2Q7Z7J5 298 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 S100A7AQ86SG5 101 aa4.81□□□□□ -1.64
CSMD3-201ENST00000297405 C7orf31Q8N865 590 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms