RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 SPAM1P38567 509 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 POLD2P49005 469 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 GTF2A1P52655 376 aaPredicted RBP16.62■□□□□ 0.25
SDCBP-201ENST00000260130 BASP1P80723 227 aaKnown RBP16.62■□□□□ 0.25
SDCBP-201ENST00000260130 CDH17Q12864 832 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 PTPRCAPQ14761 206 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 TRIP13Q15645 432 aaPredicted RBP16.62■□□□□ 0.25
SDCBP-201ENST00000260130 KRT71Q3SY84 523 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 TRIM74Q86UV6 250 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 HOOK3Q86VS8 718 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 FSTL5Q8N475 847 aaPredicted RBP16.62■□□□□ 0.25
SDCBP-201ENST00000260130 DNAAF3Q8N9W5 541 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 OR52K1Q8NGK4 314 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 DTX3LQ8TDB6 740 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 ERP44Q9BS26 406 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 CNOT10Q9H9A5 744 aaKnown RBP16.62■□□□□ 0.25
SDCBP-201ENST00000260130 PIH1D1Q9NWS0 290 aaKnown RBP16.62■□□□□ 0.25
SDCBP-201ENST00000260130 NOVA2Q9UNW9 492 aaKnown RBP16.62■□□□□ 0.25
SDCBP-201ENST00000260130 KCTD3Q9Y597 815 aa16.62■□□□□ 0.25
SDCBP-201ENST00000260130 FUCA1P04066 466 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 ALPPL2P10696 532 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 GRIA1P42261 906 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 ELOCQ15369 112 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 KCTD19Q17RG1 926 aaPredicted RBP16.61■□□□□ 0.25
SDCBP-201ENST00000260130 DUPD1Q68J44 220 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 DOK6Q6PKX4 331 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 PPP1R21Q6ZMI0 780 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 GLRX5Q86SX6 157 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 OR4K2Q8NGD2 314 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 OR4C6Q8NH72 309 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 GRK7Q8WTQ7 553 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 CLPBQ9H078 707 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 EIF2B3Q9NR50 452 aaKnown RBP16.61■□□□□ 0.25
SDCBP-201ENST00000260130 NLGN3Q9NZ94 848 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 FTSJ1Q9UET6 329 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 SPAARA0A1B0GVQ0 90 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 LMO7DNF2Z398 122 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 TRIM38O00635 465 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 LDB2O43679 373 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 ASMTLO95671 621 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 LDOC1O95751 146 aaPredicted RBP16.61■□□□□ 0.25
SDCBP-201ENST00000260130 GAS8O95995 478 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 SIM1P81133 766 aaPredicted RBP16.61■□□□□ 0.25
SDCBP-201ENST00000260130 RNF187Q5TA31 235 aaPredicted RBP16.61■□□□□ 0.25
SDCBP-201ENST00000260130 GLYATL1Q969I3 302 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 SCARF2Q96GP6 870 aaPredicted RBP16.61■□□□□ 0.25
SDCBP-201ENST00000260130 C19orf43Q9BQ61 176 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 TRIM51Q9BSJ1 452 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 DUSP23Q9BVJ7 150 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 CARS2Q9HA77 564 aaKnown RBP16.61■□□□□ 0.25
SDCBP-201ENST00000260130 SUFUQ9UMX1 484 aa16.61■□□□□ 0.25
SDCBP-201ENST00000260130 GLYATL1P3A0A0U1RQE8 302 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 TPP1O14773 563 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 TNFSF14O43557 240 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 SIGLEC6O43699 453 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 SLC25A14O95258 325 aaPredicted RBP16.6■□□□□ 0.25
SDCBP-201ENST00000260130 HNRNPH1P31943 449 aaKnown RBP16.6■□□□□ 0.25
SDCBP-201ENST00000260130 VPS41P49754 854 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 DRG2P55039 364 aaKnown RBP16.6■□□□□ 0.25
SDCBP-201ENST00000260130 GPS1Q13098 491 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 POU6F1Q14863 301 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 C6orf89Q6UWU4 347 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 SDR16C5Q8N3Y7 309 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 PTCD2Q8WV60 388 aaKnown RBP16.6■□□□□ 0.25
SDCBP-201ENST00000260130 CNDP2Q96KP4 475 aaKnown RBP16.6■□□□□ 0.25
SDCBP-201ENST00000260130 TXLNGYQ9BZA5 131 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 CASS4Q9NQ75 786 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 NEU2Q9Y3R4 380 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 OAS3Q9Y6K5 1087 aaKnown RBP16.6■□□□□ 0.25
SDCBP-201ENST00000260130 CNOT1A5YKK6 2376 aaKnown RBP16.6■□□□□ 0.25
SDCBP-201ENST00000260130 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.6■□□□□ 0.25
SDCBP-201ENST00000260130 YY2O15391 372 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 ZNF140P52738 457 aaPredicted RBP16.6■□□□□ 0.25
SDCBP-201ENST00000260130 MAGOHP61326 146 aaKnown RBP16.6■□□□□ 0.25
SDCBP-201ENST00000260130 IFT88Q13099 833 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 TCEA2Q15560 299 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 CHRNA6Q15825 494 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 DEFB133Q30KQ1 61 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 ATP13A5Q4VNC0 1218 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 FBXW10Q5XX13 1052 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 FAM151BQ6UXP7 276 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 VPS35Q96QK1 796 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 TRIM31Q9BZY9 425 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 TMEM168Q9H0V1 697 aa16.6■□□□□ 0.25
SDCBP-201ENST00000260130 ANXA6P08133 673 aa16.59■□□□□ 0.25
SDCBP-201ENST00000260130 CELA2BP08218 269 aaPredicted RBP16.59■□□□□ 0.25
SDCBP-201ENST00000260130 HADHAP40939 763 aa16.59■□□□□ 0.25
SDCBP-201ENST00000260130 GNPDA1P46926 289 aa16.59■□□□□ 0.25
SDCBP-201ENST00000260130 CDK16Q00536 496 aa16.59■□□□□ 0.25
SDCBP-201ENST00000260130 CCDC121Q6ZUS5 278 aa16.59■□□□□ 0.25
SDCBP-201ENST00000260130 MARK2Q7KZI7 788 aaKnown RBP16.59■□□□□ 0.25
SDCBP-201ENST00000260130 ERMP1Q7Z2K6 904 aa16.59■□□□□ 0.25
SDCBP-201ENST00000260130 CROCCP2Q86T23 111 aa16.59■□□□□ 0.25
SDCBP-201ENST00000260130 GKN2Q86XP6 184 aa16.59■□□□□ 0.25
SDCBP-201ENST00000260130 PHYKPLQ8IUZ5 450 aa16.59■□□□□ 0.25
SDCBP-201ENST00000260130 OR13C4Q8NGS5 318 aa16.59■□□□□ 0.25
SDCBP-201ENST00000260130 CABS1Q96KC9 395 aa16.59■□□□□ 0.25
SDCBP-201ENST00000260130 SUDS3Q9H7L9 328 aaPredicted RBP16.59■□□□□ 0.25
SDCBP-201ENST00000260130 ACTR5Q9H9F9 607 aaPredicted RBP16.59■□□□□ 0.25
SDCBP-201ENST00000260130 TRIM39Q9HCM9 518 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms