RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 CEP68Q76N32 757 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 CNTD1Q8N815 330 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 ZNF540Q8NDQ6 660 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 GRIP2Q9C0E4 1043 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 RHBDL2Q9NX52 303 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 DTLQ9NZJ0 730 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 FECHP22830 423 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 DPYSQ14117 519 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 DGCR6Q14129 220 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 ZIK1Q3SY52 487 aaPredicted RBP18.84■□□□□ 0.61
PTPRE-201ENST00000254667 SERPINA9Q86WD7 417 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 KBTBD8Q8NFY9 601 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 OR14C36Q8NHC7 312 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 RSPH9Q9H1X1 276 aaPredicted RBP18.84■□□□□ 0.61
PTPRE-201ENST00000254667 WDR55Q9H6Y2 383 aaPredicted RBP18.84■□□□□ 0.61
PTPRE-201ENST00000254667 CCDC177Q9NQR7 707 aaPredicted RBP18.84■□□□□ 0.61
PTPRE-201ENST00000254667 IRGMA1A4Y4 181 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 PRDX6P30041 224 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 CMPK1P30085 196 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 NAE1Q13564 534 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 SLC1A5Q15758 541 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 C9orf64Q5T6V5 341 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 PRSS55Q6UWB4 352 aaPredicted RBP18.84■□□□□ 0.61
PTPRE-201ENST00000254667 HDDC2Q7Z4H3 204 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 WRAP73Q9P2S5 460 aaPredicted RBP18.84■□□□□ 0.61
PTPRE-201ENST00000254667 GPN3Q9UHW5 284 aaPredicted RBP18.84■□□□□ 0.61
PTPRE-201ENST00000254667 PACSIN3Q9UKS6 424 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 ZMYND8Q9ULU4 1186 aaPredicted RBP18.84■□□□□ 0.61
PTPRE-201ENST00000254667 FCF1Q9Y324 198 aaKnown RBP18.84■□□□□ 0.61
PTPRE-201ENST00000254667 SESN1Q9Y6P5 492 aa18.84■□□□□ 0.61
PTPRE-201ENST00000254667 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.83■□□□□ 0.61
PTPRE-201ENST00000254667 MED27Q6P2C8 311 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 OR7A2PQ8NGA2 310 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 ADAMTS15Q8TE58 950 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 KCTD13Q8WZ19 329 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 SUSD3Q96L08 255 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 FBXL18Q96ME1 805 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 FCRL5Q96RD9 977 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 ILF3Q12906 894 aaKnown RBP eCLIP18.83■□□□□ 0.61
PTPRE-201ENST00000254667 TRIM25Q14258 630 aaKnown RBP18.83■□□□□ 0.61
PTPRE-201ENST00000254667 PLA2G4EQ3MJ16 856 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 CLEC20AQ6ZU45 233 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 CLNKQ7Z7G1 428 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 NPAS2Q99743 824 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 PCBD2Q9H0N5 130 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 CNTN3Q9P232 1028 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 CACNA1FO60840 1977 aa18.83■□□□□ 0.61
PTPRE-201ENST00000254667 IL6P05231 212 aa18.83■□□□□ 0.6
PTPRE-201ENST00000254667 NSG1P42857 185 aa18.83■□□□□ 0.6
PTPRE-201ENST00000254667 FSTL4Q6MZW2 842 aa18.83■□□□□ 0.6
PTPRE-201ENST00000254667 ACDQ96AP0 544 aa18.83■□□□□ 0.6
PTPRE-201ENST00000254667 MGRN1O60291 552 aa18.83■□□□□ 0.6
PTPRE-201ENST00000254667 PLIN3O60664 434 aa18.83■□□□□ 0.6
PTPRE-201ENST00000254667 ALOX12P18054 663 aa18.83■□□□□ 0.6
PTPRE-201ENST00000254667 HCAR3P49019 387 aa18.83■□□□□ 0.6
PTPRE-201ENST00000254667 ESRP1Q6NXG1 681 aaKnown RBP18.83■□□□□ 0.6
PTPRE-201ENST00000254667 B3GNT6Q6ZMB0 384 aa18.83■□□□□ 0.6
PTPRE-201ENST00000254667 DEF8Q6ZN54 512 aa18.83■□□□□ 0.6
PTPRE-201ENST00000254667 REXO4Q9GZR2 422 aaKnown RBP18.83■□□□□ 0.6
PTPRE-201ENST00000254667 NOL11Q9H8H0 719 aaKnown RBP18.83■□□□□ 0.6
PTPRE-201ENST00000254667 NMBRP28336 390 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 LDLRAP1Q5SW96 308 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 FAM92BQ6ZTR7 304 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 PACS2Q86VP3 889 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 MCMBPQ9BTE3 642 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 NUSAP1Q9BXS6 441 aaKnown RBP18.82■□□□□ 0.6
PTPRE-201ENST00000254667 OSBPL2Q9H1P3 480 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 ADGRE2Q9UHX3 823 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 PHLPP1O60346 1717 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 DUOX1Q9NRD9 1551 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 SNED1Q8TER0 1413 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 NPHS1O60500 1241 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 STAT5AP42229 794 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 PARGQ86W56 976 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 C7orf61Q8IZ16 206 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 WWP2O00308 870 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 MT-CYBP00156 380 aaPredicted RBP18.82■□□□□ 0.6
PTPRE-201ENST00000254667 FASTKD3Q14CZ7 662 aaKnown RBP18.82■□□□□ 0.6
PTPRE-201ENST00000254667 ARL13AQ5H913 290 aaPredicted RBP18.82■□□□□ 0.6
PTPRE-201ENST00000254667 GK5Q6ZS86 529 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 ARL8BQ9NVJ2 186 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 TAS2R41P59536 307 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 GTF2H2Q13888 395 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 GTF2H2CQ6P1K8 395 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 PSMD13Q9UNM6 376 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 GRIN2DO15399 1336 aa18.82■□□□□ 0.6
PTPRE-201ENST00000254667 PCCBP05166 539 aa18.81■□□□□ 0.6
PTPRE-201ENST00000254667 RPL5P46777 297 aaKnown RBP18.81■□□□□ 0.6
PTPRE-201ENST00000254667 TMEM110Q86TL2 294 aa18.81■□□□□ 0.6
PTPRE-201ENST00000254667 PRICKLE1Q96MT3 831 aaPredicted RBP18.81■□□□□ 0.6
PTPRE-201ENST00000254667 AGAP2Q99490 1192 aa18.81■□□□□ 0.6
PTPRE-201ENST00000254667 CCDC85CA6NKD9 419 aa18.81■□□□□ 0.6
PTPRE-201ENST00000254667 NRP1O14786 923 aa18.81■□□□□ 0.6
PTPRE-201ENST00000254667 IFNGP01579 166 aa18.81■□□□□ 0.6
PTPRE-201ENST00000254667 PPM1JQ5JR12 505 aa18.81■□□□□ 0.6
PTPRE-201ENST00000254667 DDX18Q9NVP1 670 aaKnown RBP18.81■□□□□ 0.6
PTPRE-201ENST00000254667 EGFL7Q9UHF1 273 aa18.81■□□□□ 0.6
PTPRE-201ENST00000254667 A0A0U1RQF3 1178 aa18.81■□□□□ 0.6
PTPRE-201ENST00000254667 LOC100506127A0A0U1RQW1 187 aa18.81■□□□□ 0.6
PTPRE-201ENST00000254667 PRPS2P11908 318 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms