RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 NKD1Q969G9 470 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 PMEPA1Q969W9 287 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 SH3KBP1Q96B97 665 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 RNF25Q96BH1 459 aaPredicted RBP7.54□□□□□ -1.2
CUX1-219ENST00000606749 CCDC42Q96M95 316 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 AGAP3Q96P47 875 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 OLFM3Q96PB7 478 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 DDA1Q9BW61 102 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 CEP41Q9BYV8 373 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 SLC25A51Q9H1U9 297 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 CARD9Q9H257 536 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 NHEJ1Q9H9Q4 299 aaPredicted RBP7.54□□□□□ -1.2
CUX1-219ENST00000606749 ZFYVE1Q9HBF4 777 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 MAGEE1Q9HCI5 957 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 TRIM39Q9HCM9 518 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 ARFGAP3Q9NP61 516 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 SARS2Q9NP81 518 aaKnown RBP7.54□□□□□ -1.2
CUX1-219ENST00000606749 SLC39A1Q9NY26 324 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 ATXN10Q9UBB4 475 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 SHOC2Q9UQ13 582 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 PCDHGA4Q9Y5G9 962 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 ADGRG1Q9Y653 693 aa7.54□□□□□ -1.2
CUX1-219ENST00000606749 KIR2DS5A0A0G2JLQ3 304 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 A0A0G2JNG1 304 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 OR5K4A6NMS3 321 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 B4E171 279 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 KIR2DS3K7RE56 304 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 CHUKO15111 745 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 DUX1O43812 170 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 SNX2O60749 519 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 MT-CYBP00156 380 aaPredicted RBP7.53□□□□□ -1.2
CUX1-219ENST00000606749 PIRTP0C851 137 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 ACP5P13686 325 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 F3P13726 295 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 ITGB6P18564 788 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 UGT1A3P35503 534 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 TSPAN7P41732 249 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 SLC1A1P43005 524 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 NR2C2P49116 596 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 CLCNKAP51800 687 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 DCDC1P59894 354 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 CYP4F2P78329 520 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 MC2RQ01718 297 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 CDK18Q07002 472 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 KIR2DS5Q14953 304 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 TCEAL1Q15170 157 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 SLC14A2Q15849 920 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 PCSK7Q16549 785 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 TBR1Q16650 682 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 TEX44Q53QW1 395 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 SNAP47Q5SQN1 464 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 DCAF12Q5T6F0 453 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 ARHGAP22Q7Z5H3 698 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 ADGRG6Q86SQ4 1221 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 FAM129CQ86XR2 697 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 RFX6Q8HWS3 928 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 VSTM4Q8IW00 320 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 RHOT1Q8IXI2 618 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 TRAM1L1Q8N609 369 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 BMPERQ8N8U9 685 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 CCDC112Q8NEF3 446 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 SPATA22Q8NHS9 363 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 HTR3CQ8WXA8 447 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 NCSTNQ92542 709 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 ARHGAP9Q9BRR9 750 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 HERPUD2Q9BSE4 406 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 SPATA16Q9BXB7 569 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 SLC12A9Q9BXP2 914 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.53□□□□□ -1.2
CUX1-219ENST00000606749 ASPSCR1Q9BZE9 553 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 SPRY4Q9C004 299 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 BRD8Q9H0E9 1235 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 OR2AG1Q9H205 316 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 GLOD4Q9HC38 313 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 PRDM8Q9NQV8 689 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 RAD18Q9NS91 495 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 KLC4Q9NSK0 619 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 ABHD10Q9NUJ1 306 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 SPTLC3Q9NUV7 552 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 DDX56Q9NY93 547 aaKnown RBP7.53□□□□□ -1.2
CUX1-219ENST00000606749 SAE1Q9UBE0 346 aaPredicted RBP7.53□□□□□ -1.2
CUX1-219ENST00000606749 CPNE7Q9UBL6 633 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 SLC23A2Q9UGH3 650 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 INTUQ9ULD6 942 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 HYOU1Q9Y4L1 999 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 AHCTF1Q8WYP5 2266 aa7.53□□□□□ -1.2
CUX1-219ENST00000606749 COL6A6A6NMZ7 2263 aa7.52□□□□□ -1.21
CUX1-219ENST00000606749 ZFC3H1O60293 1989 aaKnown RBP7.52□□□□□ -1.21
CUX1-219ENST00000606749 GPR89AB7ZAQ6 455 aa7.52□□□□□ -1.21
CUX1-219ENST00000606749 AURKAO14965 403 aa7.52□□□□□ -1.21
CUX1-219ENST00000606749 PPP1R12AO14974 1030 aaPredicted RBP7.52□□□□□ -1.21
CUX1-219ENST00000606749 KMOO15229 486 aa7.52□□□□□ -1.21
CUX1-219ENST00000606749 MFAP3LO75121 409 aa7.52□□□□□ -1.21
CUX1-219ENST00000606749 PMPCBO75439 489 aa7.52□□□□□ -1.21
CUX1-219ENST00000606749 NDST3O95803 873 aa7.52□□□□□ -1.21
CUX1-219ENST00000606749 KRT1P04264 644 aa7.52□□□□□ -1.21
CUX1-219ENST00000606749 TPM1P09493 284 aa7.52□□□□□ -1.21
CUX1-219ENST00000606749 FAM87AP0C7U9 286 aa7.52□□□□□ -1.21
CUX1-219ENST00000606749 GPR89BP0CG08 455 aa7.52□□□□□ -1.21
CUX1-219ENST00000606749 SFTPCP11686 197 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms