RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SEMA3AQ14563 771 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 STAT4Q14765 748 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 SMAD1Q15797 465 aaKnown RBP14.23□□□□□ -0.13
UPF1-211ENST00000600868 DBN1Q16643 649 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 GPRC6AQ5T6X5 926 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 RNF187Q5TA31 235 aaPredicted RBP14.23□□□□□ -0.13
UPF1-211ENST00000600868 KYAT3Q6YP21 454 aaKnown RBP14.23□□□□□ -0.13
UPF1-211ENST00000600868 GCNT7Q6ZNI0 430 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 CEP68Q76N32 757 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 ABI3BPQ7Z7G0 1075 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 SLC26A11Q86WA9 606 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 SERPINA9Q86WD7 417 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 OTUD6BQ8N6M0 293 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 C1orf216Q8TAB5 229 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 HIC2Q96JB3 615 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 MYOCQ99972 504 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 APOOQ9BUR5 198 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 WDR26Q9H7D7 661 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 ARFGAP3Q9NP61 516 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 SMYD2Q9NRG4 433 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 PHPT1Q9NRX4 125 aaPredicted RBP14.23□□□□□ -0.13
UPF1-211ENST00000600868 ZDHHC3Q9NYG2 299 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 EIF2B4Q9UI10 523 aaKnown RBP14.23□□□□□ -0.13
UPF1-211ENST00000600868 FBXO5Q9UKT4 447 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 VPS9D1Q9Y2B5 631 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 THADAQ6YHU6 1953 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 PLXNB3Q9ULL4 1909 aa14.23□□□□□ -0.13
UPF1-211ENST00000600868 IGLV3-16A0A075B6K0 115 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 A6NNZ2 444 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 CXorf49A8MYA2 514 aaPredicted RBP14.22□□□□□ -0.13
UPF1-211ENST00000600868 S1PR4O95977 384 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 NUDT17P0C025 328 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 MYCLP1P12525 358 aaPredicted RBP14.22□□□□□ -0.13
UPF1-211ENST00000600868 MAOBP27338 520 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 SLC1A2P43004 574 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 RABIFP47224 123 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 DHPSP49366 369 aaPredicted RBP14.22□□□□□ -0.13
UPF1-211ENST00000600868 CLDN2P57739 230 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 CTBP1Q13363 440 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 SIM2Q14190 667 aaPredicted RBP14.22□□□□□ -0.13
UPF1-211ENST00000600868 ITIH4Q14624 930 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 KLHL38Q2WGJ6 581 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 LYSMD4Q5XG99 296 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 FBXO38Q6PIJ6 1188 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 ZC3H14Q6PJT7 736 aaKnown RBP14.22□□□□□ -0.13
UPF1-211ENST00000600868 MARK2Q7KZI7 788 aaKnown RBP14.22□□□□□ -0.13
UPF1-211ENST00000600868 LDB1Q86U70 411 aaPredicted RBP14.22□□□□□ -0.13
UPF1-211ENST00000600868 HEATR4Q86WZ0 1026 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 LRRC6Q86X45 466 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 PHYKPLQ8IUZ5 450 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 DENND6AQ8IWF6 608 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 RGL4Q8IZJ4 473 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 HEXDCQ8WVB3 486 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 FUBP1Q96AE4 644 aaKnown RBP14.22□□□□□ -0.13
UPF1-211ENST00000600868 COPS8Q99627 209 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 INTS10Q9NVR2 710 aaKnown RBP14.22□□□□□ -0.13
UPF1-211ENST00000600868 VPS18Q9P253 973 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 FETUBQ9UGM5 382 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 CA5BQ9Y2D0 317 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 OR1A2Q9Y585 309 aa14.22□□□□□ -0.13
UPF1-211ENST00000600868 FANCMQ8IYD8 2048 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 H0Y8X5 98 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 CACNB4O00305 520 aaPredicted RBP14.21□□□□□ -0.13
UPF1-211ENST00000600868 INPP4BO15327 924 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 NDUFS3O75489 264 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 CD38P28907 300 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 LEPRP48357 1165 aaKnown RBP14.21□□□□□ -0.13
UPF1-211ENST00000600868 KIAA1024LP59773 190 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 OVGP1Q12889 678 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 ILF2Q12905 390 aaKnown RBP14.21□□□□□ -0.13
UPF1-211ENST00000600868 EFTUD2Q15029 972 aaKnown RBP eCLIP14.21□□□□□ -0.133e-6■■■□□ 18.5
UPF1-211ENST00000600868 PACS1Q6VY07 963 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 ARMCX6Q7L4S7 300 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 IQCHQ86VS3 1027 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 CTAGE3PQ8IX95 158 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 RBFAQ8N0V3 343 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 PPM1NQ8N819 430 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 MFSD2AQ8NA29 543 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 UHMK1Q8TAS1 419 aaKnown RBP14.21□□□□□ -0.13
UPF1-211ENST00000600868 SLC6A18Q96N87 628 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 CPNE1Q99829 537 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 CCDC77Q9BR77 488 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 LGR4Q9BXB1 951 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 TRIM39Q9HCM9 518 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 TM9SF3Q9HD45 589 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 GPR27Q9NS67 375 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 SLCO1B1Q9Y6L6 691 aa14.21□□□□□ -0.13
UPF1-211ENST00000600868 EXOC1LA0A1B0GW35 172 aa14.2□□□□□ -0.14
UPF1-211ENST00000600868 A0A1W2PR77 199 aa14.2□□□□□ -0.14
UPF1-211ENST00000600868 CFAP99D6REC4 459 aa14.2□□□□□ -0.14
UPF1-211ENST00000600868 DLL1O00548 723 aa14.2□□□□□ -0.14
UPF1-211ENST00000600868 BCAT2O15382 392 aaPredicted RBP14.2□□□□□ -0.14
UPF1-211ENST00000600868 VEGFDO43915 354 aa14.2□□□□□ -0.14
UPF1-211ENST00000600868 PIAS1O75925 651 aa14.2□□□□□ -0.14
UPF1-211ENST00000600868 AHSGP02765 367 aa14.2□□□□□ -0.14
UPF1-211ENST00000600868 RALBP11234 206 aa14.2□□□□□ -0.14
UPF1-211ENST00000600868 ZNF7P17097 686 aaPredicted RBP14.2□□□□□ -0.14
UPF1-211ENST00000600868 MSH3P20585 1137 aa14.2□□□□□ -0.14
UPF1-211ENST00000600868 RPS3P23396 243 aaKnown RBP eCLIP14.2□□□□□ -0.142e-7■■■■□ 25.4
UPF1-211ENST00000600868 ITPKAP23677 461 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms