RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 FGGP02679 453 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 PNLIPP16233 465 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 ZNF140P52738 457 aaPredicted RBP15.97■□□□□ 0.15
TRIM28-213ENST00000598355 KHDC1Q4VXA5 237 aaKnown RBP15.97■□□□□ 0.15
TRIM28-213ENST00000598355 ADGRG6Q86SQ4 1221 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 MARCH9Q86YJ5 346 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 NAGSQ8N159 534 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 RASGEF1CQ8N431 466 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 FAM46DQ8NEK8 389 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 DDHD1Q8NEL9 900 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 WDR48Q8TAF3 677 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 BRSK1Q8TDC3 778 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 MAIP1Q8WWC4 291 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 BPIFA1Q9NP55 256 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 APPL1Q9UKG1 709 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 CLCA2Q9UQC9 943 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 PKP3Q9Y446 797 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 ARL5AQ9Y689 179 aa15.97■□□□□ 0.15
TRIM28-213ENST00000598355 CPED1A4D0V7 1026 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 A6NCN8 305 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 ERI2A8K979 691 aaKnown RBP15.96■□□□□ 0.15
TRIM28-213ENST00000598355 AGAP14A8MT82 685 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 B4DGG1 531 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 NUDT21O43809 227 aaKnown RBP15.96■□□□□ 0.15
TRIM28-213ENST00000598355 VEGFDO43915 354 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 TCEA3O75764 348 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 SUN1O94901 812 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 SLC25A14O95258 325 aaPredicted RBP15.96■□□□□ 0.15
TRIM28-213ENST00000598355 MT-CO3P00414 261 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 GLB1P16278 677 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 ZNF8P17098 575 aaPredicted RBP15.96■□□□□ 0.15
TRIM28-213ENST00000598355 LPOP22079 712 aaPredicted RBP15.96■□□□□ 0.15
TRIM28-213ENST00000598355 PSMA3P25788 255 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 CLCNKAP51800 687 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 SEMA5AQ13591 1074 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 PEX6Q13608 980 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 MARK2Q7KZI7 788 aaKnown RBP15.96■□□□□ 0.15
TRIM28-213ENST00000598355 GLIS1Q8NBF1 620 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 MAPK15Q8TD08 544 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 CCDC74AQ96AQ1 378 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 CCDC3Q9BQI4 270 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 TTC7AQ9ULT0 858 aaPredicted RBP15.96■□□□□ 0.15
TRIM28-213ENST00000598355 DRG1Q9Y295 367 aaKnown RBP15.96■□□□□ 0.15
TRIM28-213ENST00000598355 PLEKHM1Q9Y4G2 1056 aa15.96■□□□□ 0.15
TRIM28-213ENST00000598355 CELSR3Q9NYQ7 3312 aa15.96■□□□□ 0.14
TRIM28-213ENST00000598355 GLYATL1P3A0A0U1RQE8 302 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 H7C0S8 307 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 GPR39O43194 453 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 PSMD3O43242 534 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 ZSCAN12O43309 604 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 LDB2O43679 373 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 BUD23O43709 281 aaKnown RBP15.95■□□□□ 0.14
TRIM28-213ENST00000598355 ASMTLO95671 621 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 JUPP14923 745 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 CXCR5P32302 372 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 CA5AP35218 305 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 FDFT1P37268 417 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 ACTR1BP42025 376 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 PDX1P52945 283 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 ACTR1AP61163 376 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 XIAPP98170 497 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 PDE1BQ01064 536 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 TARDBPQ13148 414 aaKnown RBP eCLIP15.95■□□□□ 0.14
TRIM28-213ENST00000598355 ITGA9Q13797 1035 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 SPARCL1Q14515 664 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 RTP5Q14D33 572 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 CHRNA6Q15825 494 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 SLC30A9Q6PML9 568 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 ZNF547Q8IVP9 402 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 PDCD7Q8N8D1 485 aaKnown RBP15.95■□□□□ 0.14
TRIM28-213ENST00000598355 ZDHHC1Q8WTX9 485 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 LRRC45Q96CN5 670 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 NRSN2Q9GZP1 204 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 DPEP2Q9H4A9 486 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 SUDS3Q9H7L9 328 aaPredicted RBP15.95■□□□□ 0.14
TRIM28-213ENST00000598355 GULP1Q9UBP9 304 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 ZNF148Q9UQR1 794 aa15.95■□□□□ 0.14
TRIM28-213ENST00000598355 PKD1L2Q7Z442 2459 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 C2orf81A6NN90 581 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 CASC3O15234 703 aaKnown RBP15.94■□□□□ 0.14
TRIM28-213ENST00000598355 STX7O15400 261 aaKnown RBP15.94■□□□□ 0.14
TRIM28-213ENST00000598355 GRID2O43424 1007 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 CRTAMO95727 393 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 FASLGP48023 281 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 PTPRCAPQ14761 206 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 ZNF648Q5T619 568 aaPredicted RBP15.94■□□□□ 0.14
TRIM28-213ENST00000598355 FAM151BQ6UXP7 276 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 SPRED1Q7Z699 444 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 C11orf96Q7Z7L8 435 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 PRELID2Q8N945 189 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 OR4K2Q8NGD2 314 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 OR13C4Q8NGS5 318 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 PATE1Q8WXA2 126 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 DEPDC7Q96QD5 511 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 OR2AG1Q9H205 316 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 ETNK1Q9HBU6 452 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 ARFGAP3Q9NP61 516 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 PAK5Q9P286 719 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 GPSM3Q9Y4H4 160 aa15.94■□□□□ 0.14
TRIM28-213ENST00000598355 KCTD3Q9Y597 815 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms