RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 TSPAN33Q86UF1 283 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 IGDCC3Q8IVU1 814 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 AGGF1Q8N302 714 aaeCLIP12.01□□□□□ -0.497e-20■■■■□ 22.6
SHKBP1-213ENST00000597325 MREGQ8N565 214 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 GSDMBQ8TAX9 411 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 CXorf40AQ8TE69 158 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 RHBDD1Q8TEB9 315 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 STYXQ8WUJ0 223 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 PEX13Q92968 403 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 MED8Q96G25 268 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 SMIM14Q96QK8 99 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 WDR83Q9BRX9 315 aaKnown RBP12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 TXLNGYQ9BZA5 131 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 CD248Q9HCU0 757 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 CHRAC1Q9NRG0 131 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 FZD4Q9ULV1 537 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 ITM2BQ9Y287 266 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 KNL1Q8NG31 2342 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 MROH6A6NGR9 719 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 DYNC1I1O14576 645 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 TERTO14746 1132 aaKnown RBP12□□□□□ -0.49
SHKBP1-213ENST00000597325 RIPK2O43353 540 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 TNFSF14O43557 240 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 LDB2O43679 373 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 AP1G1O43747 822 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 CLDN7O95471 211 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 NMBRP28336 390 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 HMGCLP35914 325 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 HADHAP40939 763 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 ZNF140P52738 457 aaPredicted RBP12□□□□□ -0.49
SHKBP1-213ENST00000597325 PRAMEP78395 509 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 MSLNQ13421 630 aaPredicted RBP12□□□□□ -0.49
SHKBP1-213ENST00000597325 PTPRRQ15256 657 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 KYNUQ16719 465 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 ANKRD20A4Q4UJ75 823 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 AGBL4Q5VU57 503 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 STEAP4Q687X5 459 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 CRTC1Q6UUV9 634 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 UNC5AQ6ZN44 842 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 TTC30BQ8N4P2 665 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 OR14C36Q8NHC7 312 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 GABPB2Q8TAK5 448 aaPredicted RBP12□□□□□ -0.49
SHKBP1-213ENST00000597325 FGF11Q92914 225 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 MFSD3Q96ES6 412 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 DNAJC1Q96KC8 554 aaKnown RBP12□□□□□ -0.49
SHKBP1-213ENST00000597325 WRAP53Q9BUR4 548 aaKnown RBP12□□□□□ -0.49
SHKBP1-213ENST00000597325 TRIM4Q9C037 500 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 NRSN2Q9GZP1 204 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 GAREM1Q9H706 876 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 PPANQ9NQ55 473 aaKnown RBP12□□□□□ -0.49
SHKBP1-213ENST00000597325 RAD18Q9NS91 495 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 PKD2L2Q9NZM6 624 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 RIMKLBQ9ULI2 386 aa12□□□□□ -0.49
SHKBP1-213ENST00000597325 CSMD1Q96PZ7 3565 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 ZFHX3Q15911 3703 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 A0A087WUV0 522 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 PSMD11O00231 422 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 AURKAO14965 403 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 AREL1O15033 823 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 TSPAN6O43657 245 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 PLRG1O43660 514 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 BUD23O43709 281 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 PCDH8O95206 1070 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 ABHD2P08910 425 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 GNSP15586 552 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 LHCGRP22888 699 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 MAOBP27338 520 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 SSTR1P30872 391 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 HSD17B3P37058 310 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 TPMTP51580 245 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 STC1P52823 247 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 TMPRSS15P98073 1019 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 RALGDSQ12967 914 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 ACOX1Q15067 660 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 CNGA3Q16281 694 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 LONRF1Q17RB8 773 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 TMEM52BQ4KMG9 183 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 BEND6Q5SZJ8 279 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 ZDHHC20Q5W0Z9 365 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 PDPK2PQ6A1A2 396 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 KIAA0930Q6ICG6 404 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 CES3Q6UWW8 571 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 C3orf62Q6ZUJ4 267 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 PRICKLE2Q7Z3G6 844 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 TMEM135Q86UB9 458 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 FAM124AQ86V42 546 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 RGL4Q8IZJ4 473 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 OTUD6BQ8N6M0 293 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 OR4K2Q8NGD2 314 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 OR13C4Q8NGS5 318 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 CDKL2Q92772 493 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 TRIM56Q9BRZ2 755 aaKnown RBP11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 LRRC4CQ9HCJ2 640 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 PREBQ9HCU5 417 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 TREX1Q9NSU2 369 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 C20orf96Q9NUD7 363 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 NLE1Q9NVX2 485 aaPredicted RBP11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 SERGEFQ9UGK8 458 aa11.99□□□□□ -0.49
SHKBP1-213ENST00000597325 GGT7Q9UJ14 662 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms