RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ACP5P13686 325 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 PDK1Q15118 436 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 NPNTQ6UXI9 565 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 TMC3Q7Z5M5 1100 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 SLC9B2Q86UD5 537 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 RHOT2Q8IXI1 618 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 GPR26Q8NDV2 337 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 SH3KBP1Q96B97 665 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 TADA1Q96BN2 335 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 AGAP3Q96P47 875 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 OLFM3Q96PB7 478 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 ARHGAP9Q9BRR9 750 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 HERPUD2Q9BSE4 406 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 SPATA16Q9BXB7 569 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 ASPSCR1Q9BZE9 553 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 NHEJ1Q9H9Q4 299 aaPredicted RBP15.91■□□□□ 0.14
CLN3-229ENST00000567963 MAGEE1Q9HCI5 957 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 ABHD10Q9NUJ1 306 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 SLC39A1Q9NY26 324 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 ATXN10Q9UBB4 475 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 SHOC2Q9UQ13 582 aa15.91■□□□□ 0.14
CLN3-229ENST00000567963 EFCAB7A8K855 629 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 B4E171 279 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 CBFA2T2O43439 604 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 MTA2O94776 668 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 SLC25A14O95258 325 aaPredicted RBP15.9■□□□□ 0.14
CLN3-229ENST00000567963 F3P13726 295 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 SLC2A4P14672 509 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 ZFXP17010 805 aaPredicted RBP15.9■□□□□ 0.14
CLN3-229ENST00000567963 ZNF8P17098 575 aaPredicted RBP15.9■□□□□ 0.14
CLN3-229ENST00000567963 UGT1A3P35503 534 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 TSPAN7P41732 249 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 PPM1FP49593 454 aaPredicted RBP15.9■□□□□ 0.14
CLN3-229ENST00000567963 CYP4F2P78329 520 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 NFATC2Q13469 925 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 LRRC38Q5VT99 294 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 ARHGAP22Q7Z5H3 698 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 FAM129CQ86XR2 697 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 BMPERQ8N8U9 685 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 NCSTNQ92542 709 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 CCDC42Q96M95 316 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 ZSCAN5AQ9BUG6 496 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 ZMYND15Q9H091 742 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 SLC25A51Q9H1U9 297 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 STN1Q9H668 368 aaKnown RBP15.9■□□□□ 0.14
CLN3-229ENST00000567963 TRIM39Q9HCM9 518 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 ARFGAP3Q9NP61 516 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 SPTLC3Q9NUV7 552 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 ADGRG1Q9Y653 693 aa15.9■□□□□ 0.14
CLN3-229ENST00000567963 KIR2DS5A0A0G2JLQ3 304 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 A0A0G2JNG1 304 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 OR5K4A6NMS3 321 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 A8MU76 341 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 GPR89AB7ZAQ6 455 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 KIR2DS3K7RE56 304 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 PPP1R12AO14974 1030 aaPredicted RBP15.89■□□□□ 0.13
CLN3-229ENST00000567963 SNX2O60749 519 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 PIRTP0C851 137 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 GPR89BP0CG08 455 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 PTMSP20962 102 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 ATP1A2P50993 1020 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 CLCNKAP51800 687 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 EPHA4P54764 986 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 RAB15P59190 212 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 DCDC1P59894 354 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 CDK18Q07002 472 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 KIR2DS5Q14953 304 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 PCSK7Q16549 785 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 TBR1Q16650 682 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 TEX44Q53QW1 395 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 SNAP47Q5SQN1 464 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 ZNF648Q5T619 568 aaPredicted RBP15.89■□□□□ 0.13
CLN3-229ENST00000567963 DCAF12Q5T6F0 453 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 RFX6Q8HWS3 928 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 PHYKPLQ8IUZ5 450 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 VSTM4Q8IW00 320 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 IL22RA1Q8N6P7 574 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 HTR3CQ8WXA8 447 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 RNF25Q96BH1 459 aaPredicted RBP15.89■□□□□ 0.13
CLN3-229ENST00000567963 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.89■□□□□ 0.13
CLN3-229ENST00000567963 BRD8Q9H0E9 1235 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 OR2AG1Q9H205 316 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 PRDM8Q9NQV8 689 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 RAD18Q9NS91 495 aa15.89■□□□□ 0.13
CLN3-229ENST00000567963 CHUKO15111 745 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 MT-CYBP00156 380 aaPredicted RBP15.88■□□□□ 0.13
CLN3-229ENST00000567963 KRT1P04264 644 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 TPM1P09493 284 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 SLC1A1P43005 524 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 NFATC3Q12968 1075 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 SLC14A2Q15849 920 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 ZNF569Q5MCW4 686 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 ALS2CLQ60I27 953 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 ANKS6Q68DC2 871 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 PDPK2PQ6A1A2 396 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 B4GALNT4Q76KP1 1039 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 ADGRG6Q86SQ4 1221 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 RHOT1Q8IXI2 618 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 TRAM1L1Q8N609 369 aa15.88■□□□□ 0.13
CLN3-229ENST00000567963 SPATA22Q8NHS9 363 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms