RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 ASPDHA6ND91 283 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 MROH6A6NGR9 719 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 NCF1BA6NI72 391 aaPredicted RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 NCF1CA8MVU1 366 aaPredicted RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 H0YAE9 185 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 KCNH1O95259 989 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 CPNE6O95741 557 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 NCF1P14598 390 aaPredicted RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 RCAN2Q14206 197 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 MFSD10Q14728 455 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 RGS21Q2M5E4 152 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 GLYATQ6IB77 296 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 MRNIPQ6NTE8 343 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 RALGPS2Q86X27 583 aaPredicted RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 LRRC49Q8IUZ0 686 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 LEMD2Q8NC56 503 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 SNX19Q92543 992 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 LPPQ93052 612 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 PAAF1Q9BRP4 392 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 WARS2Q9UGM6 360 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 UBA6A0AVT1 1052 aaPredicted RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 SYNCRIPO60506 623 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 SNX2O60749 519 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 COQ9O75208 318 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 RSL1D1O76021 490 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 CHEK2O96017 543 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 C1RP00736 705 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 PCNAP12004 261 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 SHMT2P34897 504 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 POLR2JP52435 117 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 CRYBB1P53674 252 aaPredicted RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 SPIDRQ14159 915 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 TIGD5Q53EQ6 642 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 EGFLAMQ63HQ2 1017 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 ANKS6Q68DC2 871 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 ITIH5Q86UX2 942 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 STK32CQ86UX6 486 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 PROSER1Q86XN7 944 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 TSPEARQ8WU66 669 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 HMCESQ96FZ2 354 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 CNDP2Q96KP4 475 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 ATOH8Q96SQ7 321 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 AIG1Q9NVV5 245 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 TRNAU1APQ9NX07 287 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 ARL5AQ9Y689 179 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 TMEM221A6NGB7 291 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 EEDO75530 441 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 F2P00734 622 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 CDH3P22223 829 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 HRH2P25021 359 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 PGFP49763 221 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 ARSFP54793 590 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 OR4D2P58180 307 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 AFMIDQ63HM1 303 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 TMEM199Q8N511 208 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 RHEBL1Q8TAI7 183 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 ZC3H15Q8WU90 426 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 CHPT1Q8WUD6 406 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 TRUB1Q8WWH5 349 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 LHPPQ9H008 270 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 ABHD16BQ9H3Z7 469 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 TFB2MQ9H5Q4 396 aaKnown RBP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 TMLHEQ9NVH6 421 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 MIOSQ9NXC5 875 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 GMIPQ9P107 970 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 FAM50BQ9Y247 325 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 PCDHGA4Q9Y5G9 962 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 SLC30A1Q9Y6M5 507 aa13.88□□□□□ -0.19
VPS9D1-202ENST00000561976 MIA3Q5JRA6 1907 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 NYNRINQ9P2P1 1898 aaKnown RBP13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 TRIM64BA6NI03 449 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 LDB2O43679 373 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 SERPINB7O75635 380 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 PEX11BO96011 259 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 MMP2P08253 660 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 PIRTP0C851 137 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 HAPLN1P10915 354 aaPredicted RBP13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 TIAL1Q01085 375 aaKnown RBP eCLIP13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 IHHQ14623 411 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 LDLRAP1Q5SW96 308 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 IQSEC1Q6DN90 963 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 TAF2Q6P1X5 1199 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 METTL23Q86XA0 190 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 STAG3L4Q8TBR4 150 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 RAB2BQ8WUD1 216 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 TMBIM1Q969X1 311 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 CDCA5Q96FF9 252 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 RTP3Q9BQQ7 232 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 NOL6Q9H6R4 1146 aaKnown RBP13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 PALMDQ9NP74 551 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 PSME2Q9UL46 239 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 PCDHGA11Q9Y5H2 935 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 MAGED1Q9Y5V3 778 aaPredicted RBP13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 CCDC162PA2VCL2 907 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 IQCA1LA6NCM1 817 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 DEAF1O75398 565 aaPredicted RBP13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 CLPXO76031 633 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 SEC14L2O76054 403 aa13.87□□□□□ -0.19
VPS9D1-202ENST00000561976 RHOBTB1O94844 696 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms