RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 OGFRQ9NZT2 677 aa16.25■□□□□ 0.19
CLN3-208ENST00000561505 NFKBIL1Q9UBC1 381 aaPredicted RBP16.25■□□□□ 0.19
CLN3-208ENST00000561505 IP6K2Q9UHH9 426 aa16.25■□□□□ 0.19
CLN3-208ENST00000561505 CHKBQ9Y259 395 aa16.25■□□□□ 0.19
CLN3-208ENST00000561505 CHUKO15111 745 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 POLR1CO15160 346 aaPredicted RBP16.24■□□□□ 0.19
CLN3-208ENST00000561505 INPP4BO15327 924 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 MFSD11O43934 449 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 CYP1A2P05177 515 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 MMP2P08253 660 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 CD48P09326 243 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 ZNF165P49910 485 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 DPYSL3Q14195 570 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 IFI16Q16666 785 aaKnown RBP16.24■□□□□ 0.19
CLN3-208ENST00000561505 PLXDC1Q8IUK5 500 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 ESX1Q8N693 406 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 STARD8Q92502 1023 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 SYN2Q92777 582 aaPredicted RBP16.24■□□□□ 0.19
CLN3-208ENST00000561505 PLEKHG4BQ96PX9 1271 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 STN1Q9H668 368 aaKnown RBP16.24■□□□□ 0.19
CLN3-208ENST00000561505 PCDH9Q9HC56 1237 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 RBM22Q9NW64 420 aaKnown RBP eCLIP16.24■□□□□ 0.19
CLN3-208ENST00000561505 CPNE7Q9UBL6 633 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 PRKAB1Q9Y478 270 aa16.24■□□□□ 0.19
CLN3-208ENST00000561505 A8MU76 341 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 ANKRD66B4E2M5 251 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 ASMTLO95671 621 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 NTRK1P04629 796 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 SKILP12757 684 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 F8A1P23610 371 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 EPHB1P54762 984 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 NFATC2Q13469 925 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 NR1I3Q14994 352 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 IGFBP7Q16270 282 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 QPCTQ16769 361 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 ANKRD20A8PQ5CZ79 823 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 UNC5BQ8IZJ1 945 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 C9orf72Q96LT7 481 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 NAP1L5Q96NT1 182 aaPredicted RBP16.23■□□□□ 0.19
CLN3-208ENST00000561505 PSMG3-AS1Q96PY0 264 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 ZNF670Q9BS34 389 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 THAP2Q9H0W7 228 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 SEMA5BQ9P283 1151 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 ATXN10Q9UBB4 475 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 KCNK6Q9Y257 313 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 KCTD3Q9Y597 815 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 KCNMB2Q9Y691 235 aa16.23■□□□□ 0.19
CLN3-208ENST00000561505 GRID2O43424 1007 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 HLA-DQB2P05538 268 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 GP1BBP13224 206 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 CA4P22748 312 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 DCDC1P59894 354 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 TYRO3Q06418 890 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 SNAP47Q5SQN1 464 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 PDPK2PQ6A1A2 396 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 TCTN3Q6NUS6 607 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 TMEM26Q6ZUK4 368 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 CNTD1Q8N815 330 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 MIB2Q96AX9 1013 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 TADA1Q96BN2 335 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 HDAC11Q96DB2 347 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 TRIB3Q96RU7 358 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 MLPHQ9BV36 600 aaPredicted RBP16.22■□□□□ 0.19
CLN3-208ENST00000561505 TBC1D10AQ9BXI6 508 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 ZNF768Q9H5H4 540 aaKnown RBP16.22■□□□□ 0.19
CLN3-208ENST00000561505 TRIM39Q9HCM9 518 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 SCHIP1Q9P0W5 487 aaPredicted RBP16.22■□□□□ 0.19
CLN3-208ENST00000561505 ZNF624Q9P2J8 865 aaPredicted RBP16.22■□□□□ 0.19
CLN3-208ENST00000561505 EPHA6Q9UF33 1036 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 NENFQ9UMX5 172 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 PCDHGA6Q9Y5G7 932 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 BZW2Q9Y6E2 419 aaKnown RBP16.22■□□□□ 0.19
CLN3-208ENST00000561505 RPS6KL1Q9Y6S9 549 aa16.22■□□□□ 0.19
CLN3-208ENST00000561505 C1orf232A0A0U1RR37 186 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 A0A1W2PQJ5 194 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 PRKAR1AP10644 381 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 FGF5P12034 268 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 ACP5P13686 325 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 ZNF8P17098 575 aaPredicted RBP16.21■□□□□ 0.19
CLN3-208ENST00000561505 TCN2P20062 427 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 SLC19A1P41440 591 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 ITKQ08881 620 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 SLC10A2Q12908 348 aaPredicted RBP16.21■□□□□ 0.19
CLN3-208ENST00000561505 IL11RAQ14626 422 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 PDK2Q15119 407 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 DEFB109BQ30KR1 87 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 ATP13A4Q4VNC1 1196 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 LACTB2Q53H82 288 aaPredicted RBP16.21■□□□□ 0.19
CLN3-208ENST00000561505 CCDC122Q5T0U0 273 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 ABRAXAS1Q6UWZ7 409 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 WASH2PQ6VEQ5 465 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 PQLC3Q8N755 202 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 KLHL6Q8WZ60 621 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 BTBD6Q96KE9 485 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 RAB33BQ9H082 229 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 WASH6PQ9NQA3 447 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 PRDM8Q9NQV8 689 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 ZNF71Q9NQZ8 489 aaPredicted RBP16.21■□□□□ 0.19
CLN3-208ENST00000561505 HAUS2Q9NVX0 235 aa16.21■□□□□ 0.19
CLN3-208ENST00000561505 PKD2L2Q9NZM6 624 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms