RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 OR14L1PQ8NHC6 308 aa3.19□□□□□ -1.9
VRK1-202ENST00000553683 BBS10Q8TAM1 723 aa3.19□□□□□ -1.9
VRK1-202ENST00000553683 TRPC4APQ8TEL6 797 aa3.19□□□□□ -1.9
VRK1-202ENST00000553683 TMEM255BQ8WV15 326 aa3.19□□□□□ -1.9
VRK1-202ENST00000553683 RHBDF1Q96CC6 855 aa3.19□□□□□ -1.9
VRK1-202ENST00000553683 PGLYRP2Q96PD5 576 aa3.19□□□□□ -1.9
VRK1-202ENST00000553683 CSTL1Q9H114 145 aa3.19□□□□□ -1.9
VRK1-202ENST00000553683 SEBOXQ9HB31 216 aaPredicted RBP3.19□□□□□ -1.9
VRK1-202ENST00000553683 SDF2L1Q9HCN8 221 aa3.19□□□□□ -1.9
VRK1-202ENST00000553683 HCFC1R1Q9NWW0 138 aa3.19□□□□□ -1.9
VRK1-202ENST00000553683 LIMA1Q9UHB6 759 aaKnown RBP3.19□□□□□ -1.9
VRK1-202ENST00000553683 MKLN1Q9UL63 735 aa3.19□□□□□ -1.9
VRK1-202ENST00000553683 KCNE2Q9Y6J6 123 aa3.19□□□□□ -1.9
VRK1-202ENST00000553683 A0A1W2PP11 408 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 J3KRW8 73 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 MAP2K7O14733 419 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 ANKRD28O15084 1053 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 PDE9AO76083 593 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 IGHV4-39P01824 125 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 GM2AP17900 193 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 TCEA1P23193 301 aaKnown RBP3.18□□□□□ -1.9
VRK1-202ENST00000553683 HOXA13P31271 388 aaPredicted RBP3.18□□□□□ -1.9
VRK1-202ENST00000553683 TIMP3P35625 211 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 AHRP35869 848 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 F2RL1P55085 397 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 TAS2R40P59535 323 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 MPP1Q00013 466 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 G3BP1Q13283 466 aaKnown RBP eCLIP3.18□□□□□ -1.9
VRK1-202ENST00000553683 DMP1Q13316 513 aaPredicted RBP3.18□□□□□ -1.9
VRK1-202ENST00000553683 PDE1CQ14123 709 aaPredicted RBP3.18□□□□□ -1.9
VRK1-202ENST00000553683 FRG1Q14331 258 aaKnown RBP3.18□□□□□ -1.9
VRK1-202ENST00000553683 PCGF3Q3KNV8 242 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 KRTCAP3Q53RY4 240 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 ZNF805Q5CZA5 627 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 HIST2H2BCQ6DN03 193 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 HIST2H2BDQ6DRA6 164 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 FAM109BQ6ICB4 259 aaPredicted RBP3.18□□□□□ -1.9
VRK1-202ENST00000553683 GLDNQ6ZMI3 551 aaPredicted RBP3.18□□□□□ -1.9
VRK1-202ENST00000553683 FRMD1Q8N878 549 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 SLC38A9Q8NBW4 561 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 OR1J2Q8NGS2 313 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 POMGNT1Q8WZA1 660 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 CCDC34Q96HJ3 373 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 ABHD8Q96I13 439 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 MUC13Q9H3R2 512 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 RANGRFQ9HD47 186 aaPredicted RBP3.18□□□□□ -1.9
VRK1-202ENST00000553683 DIAPH3Q9NSV4 1193 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 TCP11L1Q9NUJ3 509 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 TRMT1Q9NXH9 659 aaKnown RBP3.18□□□□□ -1.9
VRK1-202ENST00000553683 STK39Q9UEW8 545 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 CNOT8Q9UFF9 292 aaKnown RBP3.18□□□□□ -1.9
VRK1-202ENST00000553683 MTMR6Q9Y217 621 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 KLHL20Q9Y2M5 609 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 OR2W1Q9Y3N9 320 aa3.18□□□□□ -1.9
VRK1-202ENST00000553683 IGLV5-45A0A087WSX0 123 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 A0A087X0M5 115 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 A0A1B0GX30 115 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 CCDC189A1A4V9 331 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 PRR23AA6NEV1 266 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 GRID2O43424 1007 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 SCGB1D1O95968 90 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 HIST1H2ABP04908 130 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 LAMP2P13473 410 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 ATP1A3P13637 1013 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 TMEM11P17152 192 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 HIST1H2ADP20671 130 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 NR2C2P49116 596 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 CTSCP53634 463 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 CLDN20P56880 219 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 RPS3AP61247 264 aaKnown RBP3.17□□□□□ -1.9
VRK1-202ENST00000553683 PRAMEP78395 509 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 RPL24P83731 157 aaKnown RBP3.17□□□□□ -1.9
VRK1-202ENST00000553683 PLIN5Q00G26 463 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 SREBF2Q12772 1141 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 NAB2Q15742 525 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 TBCEQ15813 527 aaPredicted RBP3.17□□□□□ -1.9
VRK1-202ENST00000553683 TSTQ16762 297 aaKnown RBP3.17□□□□□ -1.9
VRK1-202ENST00000553683 OTUD3Q5T2D3 398 aaPredicted RBP3.17□□□□□ -1.9
VRK1-202ENST00000553683 ADAM5Q6NVV9 412 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 ZNF852Q6ZMS4 543 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 KCTD8Q6ZWB6 473 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 HIST3H2AQ7L7L0 130 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 SLC9B2Q86UD5 537 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 TMPRSS12Q86WS5 348 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 EPHX4Q8IUS5 362 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 MAP7D3Q8IWC1 876 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 CCDC13Q8IYE1 715 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 GCSAMQ8N6F7 178 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 KBTBD3Q8NAB2 608 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 TDRD7Q8NHU6 1098 aaKnown RBP3.17□□□□□ -1.9
VRK1-202ENST00000553683 SLC28A3Q9HAS3 691 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 LRRC4Q9HBW1 653 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 IRAK4Q9NWZ3 460 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 MDFICQ9P1T7 246 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 COPG2Q9UBF2 871 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 ERRFI1Q9UJM3 462 aaPredicted RBP3.17□□□□□ -1.9
VRK1-202ENST00000553683 PADI3Q9ULW8 664 aa3.17□□□□□ -1.9
VRK1-202ENST00000553683 RUSC2Q8N2Y8 1516 aa3.16□□□□□ -1.9
VRK1-202ENST00000553683 ARHGEF40Q8TER5 1519 aa3.16□□□□□ -1.9
VRK1-202ENST00000553683 OR5K3A6NET4 321 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms