RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 TMPRSS9Q7Z410 1059 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 TMEM173Q86WV6 379 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 FAM109AQ8N4B1 249 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 TTC30BQ8N4P2 665 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 WDTC1Q8N5D0 677 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 KCTD6Q8NC69 237 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 APPL2Q8NEU8 664 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 CADM4Q8NFZ8 388 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 GPR150Q8NGU9 434 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 PPTC7Q8NI37 304 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 CHURC1Q8WUH1 139 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 FBXL20Q96IG2 436 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 BOD1Q96IK1 185 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 CMTM3Q96MX0 182 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 SPATA33Q96N06 139 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 NR1H4Q96RI1 486 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 MEIS3Q99687 375 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 TEX12Q9BXU0 123 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 ADGRE3Q9BY15 652 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 SLC32A1Q9H598 525 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 CDCP1Q9H5V8 836 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 SEMA4BQ9NPR2 832 aaPredicted RBP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 PARPBPQ9NWS1 579 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 EHD3Q9NZN3 535 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 EPS15L1Q9UBC2 864 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 AMFRQ9UKV5 643 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 PADI3Q9ULW8 664 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 NDRG2Q9UN36 371 aaKnown RBP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 NEUROG3Q9Y4Z2 214 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 SPTAN1Q13813 2472 aaKnown RBP3.9□□□□□ -1.79
LIMA1-208ENST00000551691 C2orf16Q68DN1 1984 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 PATJQ8NI35 1801 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 DOCK6Q96HP0 2047 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 ZNF532Q9HCE3 1301 aa3.9□□□□□ -1.79
LIMA1-208ENST00000551691 NOTCH2Q04721 2471 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 BAZ2AQ9UIF9 1905 aaKnown RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CACNA1EQ15878 2313 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CACNA1FO60840 1977 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 A0A1W2PQ09 198 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 KRTAP23-1A1A580 65 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 LIPT2A6NK58 231 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 ZAR1LA6NP61 321 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 QSOX1O00391 747 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 PSMA7O14818 248 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 BCAT2O15382 392 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 PPFIA2O75334 1257 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 NDUFA10O95299 355 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CBX6O95503 412 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 AFPP02771 609 aaKnown RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 ICAM1P05362 532 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 URODP06132 367 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 RHOP08100 348 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CHRM2P08172 466 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CHRM4P08173 479 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 NPSP0C0P6 89 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 STAG3L1P0CL83 205 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 IRF1P10914 325 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 LYL1P12980 280 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 RARGP13631 454 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 NDUFB7P17568 137 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 TTKP33981 857 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 HNF1BP35680 557 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 SKIV2L2P42285 1042 aaKnown RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 SLC1A4P43007 532 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CAPZA2P47755 286 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 METAP2P50579 478 aaKnown RBP eCLIP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 STAT2P52630 851 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CDH8P55286 799 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 RAE1P78406 368 aaKnown RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 IFI35P80217 286 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 TMEM115Q12893 351 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 HTR4Q13639 388 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 FHL3Q13643 280 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 MYBPC2Q14324 1141 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 VEPH1Q14D04 833 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CNGA3Q16281 694 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 NTRK2Q16620 822 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 PRICKLE4Q2TBC4 344 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 TBC1D25Q3MII6 688 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 SLC9B1Q4ZJI4 515 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CCDC184Q52MB2 194 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 GLE1Q53GS7 698 aaKnown RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 PLEKHS1Q5SXH7 462 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CELF3Q5SZQ8 465 aaKnown RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 B3GNTL1Q67FW5 361 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CRELD2Q6UXH1 353 aaPredicted RBP3.89□□□□□ -1.79
LIMA1-208ENST00000551691 TPRG1Q6ZUI0 275 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 SLC46A3Q7Z3Q1 461 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 MAVSQ7Z434 540 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 GALNTL5Q7Z4T8 443 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CCDC91Q7Z6B0 441 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 KBTBD6Q86V97 674 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 IQCA1Q86XH1 822 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 TICAM1Q8IUC6 712 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 GALNT13Q8IUC8 556 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 BRSK2Q8IWQ3 736 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 ADGRF2Q8IZF7 708 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 AVL9Q8NBF6 648 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 C11orf65Q8NCR3 313 aa3.89□□□□□ -1.79
LIMA1-208ENST00000551691 CPEB3Q8NE35 698 aaKnown RBP3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms