RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	TRMO	Q9BU70	441 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	ERVK-6	Q9BXR3	956 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	ATP13A1	Q9HD20	1204 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	VPS45	Q9NRW7	570 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	DNMT3L	Q9UJW3	386 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	DHRS12	A0PJE2	317 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	CBX4	O00257	560 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	PIP5K1B	O14986	540 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	COCH	O43405	550 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	SEC24A	O95486	1093 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	S1PR4	O95977	384 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	COL6A1	P12109	1028 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	STT3A	P46977	705 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	RGR	P47804	291 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	ATP4B	P51164	291 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	TAF12	Q16514	161 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	SLC15A3	Q8IY34	581 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	WBP2	Q969T9	261 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	SPATA17	Q96L03	361 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	HIPK3	Q9H422	1215 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	ARNT2	Q9HBZ2	717 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	MID1IP1	Q9NPA3	183 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	12.45	□□□□□ -0.42	1e-7	■■□□□ 12.1
RNF4-222	ENST00000541204	EBF1	Q9UH73	591 aa		12.45	□□□□□ -0.42
RNF4-222	ENST00000541204	C2orf78	A6NCI8	922 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	LDB2	O43679	373 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	ACSL4	O60488	711 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	PRAMEF11	O60813	436 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	CDK14	O94921	469 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	BMP10	O95393	424 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	CLIC3	O95833	236 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	KLKB1	P03952	638 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	OXTR	P30559	389 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	TTC33	Q6PID6	262 aa	Predicted RBP	12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	LINGO4	Q6UY18	593 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	CLVS1	Q8IUQ0	354 aa	Predicted RBP	12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	DDIAS	Q8IXT1	998 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	TEX26	Q8N6G2	289 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	PTGR2	Q8N8N7	351 aa	Predicted RBP	12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	SLAIN1	Q8ND83	568 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	AUTS2	Q8WXX7	1259 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	ABTB1	Q969K4	478 aa	Predicted RBP	12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	RMDN1	Q96DB5	314 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	NSUN5	Q96P11	429 aa	Known RBP	12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	VN1R3	Q9BXE9	311 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	POLR3B	Q9NW08	1133 aa	Predicted RBP	12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	CIDEB	Q9UHD4	219 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	BBIP1	A8MTZ0	92 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	ANGPT2	O15123	496 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	MAGEB3	O15480	346 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	WISP3	O95389	354 aa	Predicted RBP	12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	GOT2	P00505	430 aa	Known RBP	12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	SOX11	P35716	441 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	ATP6V0D1	P61421	351 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	GNA12	Q03113	381 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	ELAVL2	Q12926	359 aa	Known RBP	12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	PLD1	Q13393	1074 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	GPR141	Q7Z602	305 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	CAMK1D	Q8IU85	385 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	GABPB2	Q8TAK5	448 aa	Predicted RBP	12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	TWIST2	Q8WVJ9	160 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	ZUFSP	Q96AP4	578 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	HSPBAP1	Q96EW2	488 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	RPL10L	Q96L21	214 aa	Known RBP	12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	NSMCE3	Q96MG7	304 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	ADI1	Q9BV57	179 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	CMTM6	Q9NX76	183 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	FNIP2	Q9P278	1114 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	ABCD2	Q9UBJ2	740 aa		12.44	□□□□□ -0.42
RNF4-222	ENST00000541204	RNF103-CHMP3	A0A140T963	221 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	MROH6	A6NGR9	719 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	UBXN8	O00124	270 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	ZDHHC11B	P0C7U3	371 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	CD1D	P15813	335 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	CORO1A	P31146	461 aa	Known RBP	12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	SLC11A2	P49281	568 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	CTBS	Q01459	385 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	RING1	Q06587	406 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	MERTK	Q12866	999 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	SEMA3A	Q14563	771 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	PFKFB4	Q16877	469 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	CMTR2	Q8IYT2	770 aa	Known RBP	12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	LRRC43	Q8N309	656 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	MIER2	Q8N344	545 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	HOPX	Q9BPY8	73 aa	Predicted RBP	12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	RNF38	Q9H0F5	515 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	MUC3B	Q9H195	1237 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	AGPAT4	Q9NRZ5	378 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	HACD3	Q9P035	362 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	OAZ3	Q9UMX2	235 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	BTRC	Q9Y297	605 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	NDUFAF1	Q9Y375	327 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	LOC285095	A0A1B0GVY8	99 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	CCDC162P	A2VCL2	907 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	ZNF840P	A6NDX5	716 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	FXYD1	O00168	92 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	SLC7A4	O43246	635 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	SERPINF2	P08697	491 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	LINC00032	P0C843	101 aa		12.43	□□□□□ -0.42
RNF4-222	ENST00000541204	PSMA4	P25789	261 aa	Known RBP	12.43	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms