RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 DPY19L3Q6ZPD9 716 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 USP30Q70CQ3 517 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 NUDCD3Q8IVD9 361 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 OR14C36Q8NHC7 312 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 C1orf216Q8TAB5 229 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 GRIN3AQ8TCU5 1115 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 OR8D1Q8WZ84 308 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 TADA1Q96BN2 335 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 VPS39Q96JC1 886 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 ZNF599Q96NL3 588 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 RTKNQ9BST9 563 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 ACE2Q9BYF1 805 aaPredicted RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 TM6SF2Q9BZW4 377 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 POLR1EQ9GZS1 481 aaKnown RBP11.91□□□□□ -0.5
CLIP1-208ENST00000537004 EBF2Q9HAK2 575 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 TMEM9BQ9NQ34 198 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 TREX1Q9NSU2 369 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 SLC2A6Q9UGQ3 507 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 SLC6A14Q9UN76 642 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 SLC12A4Q9UP95 1085 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 NCKAP1Q9Y2A7 1128 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 CAPN7Q9Y6W3 813 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 CHD8Q9HCK8 2581 aa11.91□□□□□ -0.5
CLIP1-208ENST00000537004 IGHV4-34P06331 123 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 GSTA1P08263 222 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 PAMP19021 973 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 ARNTP27540 789 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 ALDH3A1P30838 453 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 GKP32189 559 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 HOXD12P35452 270 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 CSNK1EP49674 416 aaKnown RBP11.9□□□□□ -0.5
CLIP1-208ENST00000537004 SERPINH1P50454 418 aaKnown RBP11.9□□□□□ -0.5
CLIP1-208ENST00000537004 VASPP50552 380 aaPredicted RBP11.9□□□□□ -0.5
CLIP1-208ENST00000537004 LIMK1P53667 647 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 ADPRHP54922 357 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 TMPRSS15P98073 1019 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 CNTN1Q12860 1018 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 CHI3L2Q15782 390 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 CNGA3Q16281 694 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 INSCQ1MX18 579 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 ARMC3Q5W041 872 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 ATG16L1Q676U5 607 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 C16orf46Q6P387 395 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 C22orf39Q6P5X5 142 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 ZNF783Q6ZMS7 281 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 CNTN4Q8IWV2 1026 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 OR6K2Q8NGY2 324 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 RAB3IL1Q8TBN0 382 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 PIP4K2CQ8TBX8 421 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 SEMA3CQ99985 751 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 CAB39LQ9H9S4 337 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 SCML1Q9UN30 329 aa11.9□□□□□ -0.5
CLIP1-208ENST00000537004 HEATR9A2RTY3 570 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 HGSO14964 777 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-208ENST00000537004 MUSKO15146 869 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 BCAT2O15382 392 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-208ENST00000537004 PLIN3O60664 434 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 GJB3O75712 270 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 ADH1BP00325 375 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 C5AR1P21730 350 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 SDHBP21912 280 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 GMPRP36959 345 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 PPP2CBP62714 309 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 PPP2CAP67775 309 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 CCDC15Q0P6D6 951 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 BST1Q10588 318 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 GALNTL6Q49A17 601 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 CES4AQ5XG92 561 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 KIAA0930Q6ICG6 404 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-208ENST00000537004 RETSATQ6NUM9 610 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 ZC3HC1Q86WB0 502 aaKnown RBP11.89□□□□□ -0.51
CLIP1-208ENST00000537004 RFWD2Q8NHY2 731 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 CEP76Q8TAP6 659 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 ZNF398Q8TD17 642 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 RANBP9Q96S59 729 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 GPR22Q99680 433 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 ORAI3Q9BRQ5 295 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 TRIM55Q9BYV6 548 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 RHOJQ9H4E5 214 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 SGK2Q9HBY8 427 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 DCTN4Q9UJW0 460 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 TNRC6BQ9UPQ9 1833 aaKnown RBP11.89□□□□□ -0.51
CLIP1-208ENST00000537004 TPRP12270 2363 aaKnown RBP11.89□□□□□ -0.51
CLIP1-208ENST00000537004 A0A096LPK6 155 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 KPNA3O00505 521 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-208ENST00000537004 ARHGAP33O14559 1287 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 GIPC1O14908 333 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 TGDSO95455 350 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 GSRP00390 522 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 PROCP04070 461 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 MPOP05164 745 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 GNSP15586 552 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 HADHAP40939 763 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 BNC1Q01954 994 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 GRIK2Q13002 908 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 MSLNQ13421 630 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-208ENST00000537004 GRM3Q14832 879 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 DBN1Q16643 649 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 UGP2Q16851 508 aa11.89□□□□□ -0.51
CLIP1-208ENST00000537004 FASTKD1Q53R41 847 aaKnown RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms