RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ORAI1Q96D31 301 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 FBXO17Q96EF6 278 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 CALML4Q96GE6 196 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 CCDC34Q96HJ3 373 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 CMTM3Q96MX0 182 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 DUX3Q96PT4 197 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 NUDCD1Q96RS6 583 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 MAP7D2Q96T17 732 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 CMKLR1Q99788 373 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 CHCHD6Q9BRQ6 235 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 SIL1Q9H173 461 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 ZNF334Q9HCZ1 680 aaPredicted RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 BLOC1S4Q9NUP1 217 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 NSMCE4AQ9NXX6 385 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 ERRFI1Q9UJM3 462 aaPredicted RBP2.74□□□□□ -1.97
CD44-238ENST00000534296 VPS28Q9UK41 221 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 MKLN1Q9UL63 735 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 SESN1Q9Y6P5 492 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 SCN5AQ14524 2016 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 NOTCH4Q99466 2003 aa2.74□□□□□ -1.97
CD44-238ENST00000534296 NPIPB15A6NHN6 443 aaPredicted RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 LILRA5A6NI73 299 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 ZNF587BE7ETH6 402 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 K7ENM7 598 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 VCYO14598 125 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 LDLRAD4O15165 306 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 NKX2-2O95096 273 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 CAVIN2O95810 425 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 CLTBP09497 229 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 LAMP2P13473 410 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 POLR2CP19387 275 aaPredicted RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 UBA1P22314 1058 aaKnown RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 TCEA1P23193 301 aaKnown RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 BDNFP23560 247 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 FUT6P51993 359 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 F2RL1P55085 397 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 TAS2R38P59533 333 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 ZBED6P86452 979 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 ARL16Q0P5N6 197 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 GRIK2Q13002 908 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 GAGE5Q13069 117 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 GAGE6Q13070 117 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 DMP1Q13316 513 aaPredicted RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 CUL4AQ13619 759 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 FGFBP1Q14512 234 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 ZNF234Q14588 700 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 RBBP5Q15291 538 aaKnown RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 C2orf68Q2NKX9 166 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 PRICKLE4Q2TBC4 344 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 KRTAP27-1Q3LI81 207 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 MFSD4BQ5TF39 518 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 SPATA1Q5VX52 437 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 ZNF704Q6ZNC4 412 aaPredicted RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 QSOX2Q6ZRP7 698 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 FASTKD5Q7L8L6 764 aaKnown RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 NFE4Q86UQ8 179 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 NME8Q8N427 588 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 TTC39CQ8N584 583 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 SRBD1Q8N5C6 995 aaKnown RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 PCDH20Q8N6Y1 951 aaKnown RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 ZBTB8BQ8NAP8 495 aaPredicted RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 TMEM116Q8NCL8 245 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 MCUQ8NE86 351 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 BBS10Q8TAM1 723 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 THAP6Q8TBB0 222 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 GRAPLQ8TC17 118 aaPredicted RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 USP6NLQ92738 828 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 PIGTQ969N2 578 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 PABPC5Q96DU9 382 aaKnown RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 RRNAD1Q96FB5 475 aaKnown RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 ZNF583Q96ND8 569 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 SYT17Q9BSW7 474 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 USP44Q9H0E7 712 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 MUC13Q9H3R2 512 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 SLC28A3Q9HAS3 691 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 MMP25Q9NPA2 562 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 SEPT11Q9NVA2 429 aaKnown RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 TERF2IPQ9NYB0 399 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 TAAR2Q9P1P5 351 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 UBA2Q9UBT2 640 aaPredicted RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 FBXL2Q9UKC9 423 aa2.73□□□□□ -1.97
CD44-238ENST00000534296 ZNF215Q9UL58 517 aaPredicted RBP2.73□□□□□ -1.97
CD44-238ENST00000534296 PTPRCP08575 1304 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 KDM3AQ9Y4C1 1321 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 A0A087WYN8 130 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 KANSL1LA0AUZ9 987 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 A6NCN8 305 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 PRR23AA6NEV1 266 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 LIPT2A6NK58 231 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 BUD23O43709 281 aaKnown RBP2.72□□□□□ -1.97
CD44-238ENST00000534296 HS6ST1O60243 411 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 USO1O60763 962 aaKnown RBP2.72□□□□□ -1.97
CD44-238ENST00000534296 SLC22A3O75751 556 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 SEC31AO94979 1220 aaKnown RBP2.72□□□□□ -1.97
CD44-238ENST00000534296 STARD3NLO95772 234 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 RNF224P0DH78 156 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 ACTN1P12814 892 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 IL7RP16871 459 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 ZNF23P17027 643 aa2.72□□□□□ -1.97
CD44-238ENST00000534296 NR2F2P24468 414 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms