RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 EXD3Q8N9H8 876 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 ZSCAN1Q8NBB4 408 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 ART4Q93070 314 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 TADA1Q96BN2 335 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 CCDC42Q96M95 316 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 AGAP3Q96P47 875 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 HERPUD2Q9BSE4 406 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 SPATA16Q9BXB7 569 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 BRD8Q9H0E9 1235 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 NHEJ1Q9H9Q4 299 aaPredicted RBP16.65■□□□□ 0.26
CPSF1-207ENST00000531727 MAGEE1Q9HCI5 957 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 ATXN10Q9UBB4 475 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 SDK2Q58EX2 2172 aa16.65■□□□□ 0.26
CPSF1-207ENST00000531727 A6NCN8 305 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 B4E171 279 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 GRID2O43424 1007 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 MFAP3LO75121 409 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 TSPAN7P41732 249 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 PPM1FP49593 454 aaPredicted RBP16.64■□□□□ 0.25
CPSF1-207ENST00000531727 NFATC2Q13469 925 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 ODF2Q5BJF6 829 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 ZNF569Q5MCW4 686 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 FAM182AQ5T1J6 154 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 WDR74Q6RFH5 385 aaPredicted RBP16.64■□□□□ 0.25
CPSF1-207ENST00000531727 KDELC2Q7Z4H8 507 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 SLC9B2Q86UD5 537 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 VSTM4Q8IW00 320 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 GPR26Q8NDV2 337 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 EXTL1Q92935 676 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 NKD1Q969G9 470 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 SH3KBP1Q96B97 665 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 ZSCAN5AQ9BUG6 496 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 RAD18Q9NS91 495 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 OCIAD1Q9NX40 245 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 SLC39A1Q9NY26 324 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 DDX56Q9NY93 547 aaKnown RBP16.64■□□□□ 0.25
CPSF1-207ENST00000531727 NFKBIL1Q9UBC1 381 aaPredicted RBP16.64■□□□□ 0.25
CPSF1-207ENST00000531727 B3GALT1Q9Y5Z6 326 aa16.64■□□□□ 0.25
CPSF1-207ENST00000531727 HELZ2Q9BYK8 2649 aaKnown RBP16.64■□□□□ 0.25
CPSF1-207ENST00000531727 KIR2DS5A0A0G2JLQ3 304 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 A0A0G2JNG1 304 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 OR5K4A6NMS3 321 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 EFCAB7A8K855 629 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 KIR2DS3K7RE56 304 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 SNX2O60749 519 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 SLC25A14O95258 325 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-207ENST00000531727 PIRTP0C851 137 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 F3P13726 295 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 ZNF8P17098 575 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-207ENST00000531727 SLC1A1P43005 524 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 ATP1A2P50993 1020 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 CLCNKAP51800 687 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 EPHA4P54764 986 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 RAB15P59190 212 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 DYNLT1P63172 113 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 CDK18Q07002 472 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 KIR2DS5Q14953 304 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 PCSK7Q16549 785 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 ALS2CLQ60I27 953 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 PDPK2PQ6A1A2 396 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 TMC3Q7Z5M5 1100 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 FAM129CQ86XR2 697 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 PHYKPLQ8IUZ5 450 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 RHOT1Q8IXI2 618 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 TRAM1L1Q8N609 369 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 BMPERQ8N8U9 685 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 AVL9Q8NBF6 648 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 JPH3Q8WXH2 748 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-207ENST00000531727 RNF25Q96BH1 459 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-207ENST00000531727 ARHGAP9Q9BRR9 750 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-207ENST00000531727 ASPSCR1Q9BZE9 553 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 OR2AG1Q9H205 316 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 TRIM39Q9HCM9 518 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 ARFGAP3Q9NP61 516 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 SHOC2Q9UQ13 582 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 ZNF711Q9Y462 761 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 ADGRG1Q9Y653 693 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 ZNF462Q96JM2 2506 aa16.63■□□□□ 0.25
CPSF1-207ENST00000531727 GPR89AB7ZAQ6 455 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 MT-CYBP00156 380 aaPredicted RBP16.62■□□□□ 0.25
CPSF1-207ENST00000531727 SLC4A1P02730 911 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 GPR89BP0CG08 455 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 UGT1A3P35503 534 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 TCEAL1Q15170 157 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 TEX44Q53QW1 395 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 SNAP47Q5SQN1 464 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 ZNF648Q5T619 568 aaPredicted RBP16.62■□□□□ 0.25
CPSF1-207ENST00000531727 DCAF12Q5T6F0 453 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 MFSD7Q6UXD7 560 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 B4GALNT4Q76KP1 1039 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 ARHGAP22Q7Z5H3 698 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 ADGRG6Q86SQ4 1221 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 SPATA22Q8NHS9 363 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 NCSTNQ92542 709 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 GLYATL1Q969I3 302 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 SRPK1Q96SB4 655 aaKnown RBP16.62■□□□□ 0.25
CPSF1-207ENST00000531727 ANP32EQ9BTT0 268 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 GPR63Q9BZJ6 419 aa16.62■□□□□ 0.25
CPSF1-207ENST00000531727 EPB41L1Q9H4G0 881 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms