RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 PBX3P40426 434 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 PPP3CCP48454 512 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 NOVP48745 357 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 SEC61A1P61619 476 aaKnown RBP6.74□□□□□ -1.33
USP53-206ENST00000510737 SMC1AQ14683 1233 aaKnown RBP6.74□□□□□ -1.33
USP53-206ENST00000510737 PTPN14Q15678 1187 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 MPEG1Q2M385 716 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 ZNF284Q2VY69 593 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 LETM2Q2VYF4 491 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 IL31Q6EBC2 164 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 CREB3L2Q70SY1 520 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 ZBTB10Q96DT7 871 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 SARGQ9BW04 601 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 FTHL17Q9BXU8 183 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 STX8Q9UNK0 236 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 PKP3Q9Y446 797 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 AKAP13Q12802 2813 aa6.74□□□□□ -1.33
USP53-206ENST00000510737 PLIN4Q96Q06 1357 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 KANSL1LA0AUZ9 987 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 TMEM8BA6NDV4 472 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 TDGF1P13385 188 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 STAT1P42224 750 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 WTAPQ15007 396 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 CCDC6Q16204 474 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 CCDC96Q2M329 555 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 ZNF718Q3SXZ3 478 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 USH1GQ495M9 461 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 MARCH8Q5T0T0 291 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 ARHGEF16Q5VV41 709 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 SLC30A9Q6PML9 568 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 TMEM200AQ86VY9 491 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 MYADMQ96S97 322 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 RPP25Q9BUL9 199 aaKnown RBP6.73□□□□□ -1.33
USP53-206ENST00000510737 DDX23Q9BUQ8 820 aaKnown RBP6.73□□□□□ -1.33
USP53-206ENST00000510737 DDX31Q9H8H2 851 aaKnown RBP6.73□□□□□ -1.33
USP53-206ENST00000510737 IL1RAPL2Q9NP60 686 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 PAG1Q9NWQ8 432 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 ARL15Q9NXU5 204 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 NRCAMQ92823 1304 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 DOCK7Q96N67 2140 aa6.73□□□□□ -1.33
USP53-206ENST00000510737 MYH4Q9Y623 1939 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 FREM2Q5SZK8 3169 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 CD72P21854 359 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 UBA1P22314 1058 aaKnown RBP6.72□□□□□ -1.33
USP53-206ENST00000510737 GNLYP22749 145 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 LIMK1P53667 647 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 DLX5P56178 289 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 NONOQ15233 471 aaKnown RBP eCLIP6.72□□□□□ -1.33
USP53-206ENST00000510737 ARL6IP4Q66PJ3 421 aaKnown RBP6.72□□□□□ -1.33
USP53-206ENST00000510737 RINT1Q6NUQ1 792 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 C19orf48Q6RUI8 117 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 KIAA1324Q6UXG2 1013 aaKnown RBP6.72□□□□□ -1.33
USP53-206ENST00000510737 FMNL3Q8IVF7 1028 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 BICD2Q8TD16 824 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 TMED6Q8WW62 240 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 ARHGAP45Q92619 1136 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 CLDN23Q96B33 292 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 CASD1Q96PB1 797 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 IL25Q9H293 177 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 BOLA2Q9H3K6 86 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 ACTR5Q9H9F9 607 aaPredicted RBP6.72□□□□□ -1.33
USP53-206ENST00000510737 PXMP2Q9NR77 195 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 SPG21Q9NZD8 308 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 EPS15L1Q9UBC2 864 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 PNMA2Q9UL42 364 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 DENND4AQ7Z401 1863 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 WDR19Q8NEZ3 1342 aa6.72□□□□□ -1.33
USP53-206ENST00000510737 LAMA1P25391 3075 aa6.71□□□□□ -1.33
USP53-206ENST00000510737 TBC1D3DA0A087WVF3 549 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 TBC1D3IA0A087WXS9 549 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 TBC1D3EA0A087X179 549 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 TBC1D3KA0A087X1G2 549 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 MBLAC1A4D2B0 266 aaPredicted RBP6.71□□□□□ -1.34
USP53-206ENST00000510737 TBC1D3BA6NDS4 549 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 TBC1D3FA6NER0 549 aaPredicted RBP6.71□□□□□ -1.34
USP53-206ENST00000510737 SLC38A8A6NNN8 435 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 TBC1D3LB9A6J9 549 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 ANHXE9PGG2 379 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 PIP5K1BO14986 540 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 TBC1D3HP0C7X1 549 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 NPPBP16860 134 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 HSPA7P48741 367 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 MRPS6P82932 125 aaKnown RBP6.71□□□□□ -1.34
USP53-206ENST00000510737 BNC1Q01954 994 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 SF3A2Q15428 464 aaKnown RBP6.71□□□□□ -1.34
USP53-206ENST00000510737 TMEM266Q2M3C6 531 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 TBC1D3GQ6DHY5 549 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 TBC1D3CQ6IPX1 549 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 IGFN1Q86VF2 1251 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 TBC1D3Q8IZP1 549 aaPredicted RBP6.71□□□□□ -1.34
USP53-206ENST00000510737 SLC39A11Q8N1S5 342 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 CPVLQ9H3G5 476 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 PRMT8Q9NR22 394 aaPredicted RBP6.71□□□□□ -1.34
USP53-206ENST00000510737 RGS18Q9NS28 235 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 TM7SF3Q9NS93 570 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 ZDHHC7Q9NXF8 308 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 RAB23Q9ULC3 237 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 EXOC6BQ9Y2D4 811 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 MYH7BA7E2Y1 1941 aa6.71□□□□□ -1.34
USP53-206ENST00000510737 IGSF10Q6WRI0 2623 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms