RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 MKRN2OSH3BPM6 223 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 CLDN7O95471 211 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 VIPP01282 170 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 MT-ND3P03897 115 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 ATP1A1P05023 1023 aaKnown RBP20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 SPINT3P49223 89 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 CLCNKAP51800 687 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 FOXM1Q08050 763 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 NFKBIBQ15653 356 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 ANO6Q4KMQ2 910 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 LACTB2Q53H82 288 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 ODF2Q5BJF6 829 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 RBM12BQ8IXT5 1001 aaKnown RBP20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 STAMBPL1Q96FJ0 436 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 ULBP3Q9BZM4 244 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 KLHL3Q9UH77 587 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 KCNK6Q9Y257 313 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 PLEKHM1Q9Y4G2 1056 aa20.81■□□□□ 0.92
SQSTM1-210ENST00000506042 MFSD11O43934 449 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 NUAK1O60285 661 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 DNAJC6O75061 913 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 SLC25A14O95258 325 aaPredicted RBP20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 SERPING1P05155 500 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 CCNYL3P0C7X3 344 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 DSC2Q02487 901 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 SLC25A11Q02978 314 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 IL11RAQ14626 422 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 INSCQ1MX18 579 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 HENMT1Q5T8I9 393 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 PTCD2Q8WV60 388 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 CTRCQ99895 268 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 SPATA16Q9BXB7 569 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 XPO4Q9C0E2 1151 aaKnown RBP20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 TBC1D29Q9UFV1 150 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 ST14Q9Y5Y6 855 aa20.8■□□□□ 0.92
SQSTM1-210ENST00000506042 ANKRD66B4E2M5 251 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 RASSF9O75901 435 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 SKILP12757 684 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 GJC1P36383 396 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 COLEC12Q5KU26 742 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 C16orf46Q6P387 395 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 RASGRP3Q8IV61 690 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 CCDC13Q8IYE1 715 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 PMEPA1Q969W9 287 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 THAP2Q9H0W7 228 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 EPN3Q9H201 632 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 ZFYVE1Q9HBF4 777 aa20.79■□□□□ 0.92
SQSTM1-210ENST00000506042 MN1Q10571 1320 aaPredicted RBP20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 SPTA1P02549 2419 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 A0A1B0GTH6 734 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 A0A1W2PQJ5 194 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 PDZK1P1A8MUH7 402 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 KMOO15229 486 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 STAT5AP42229 794 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 HALP42357 657 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 ARSDP51689 593 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 KLRB1Q12918 225 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 GTF2H3Q13889 308 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 UBAP2LQ14157 1087 aaKnown RBP20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 DEFB109BQ30KR1 87 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 NCBP2-AS2Q69YL0 99 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 KLHL35Q6PF15 583 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 C6orf15Q6UXA7 325 aaPredicted RBP20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 FAM71BQ8TC56 605 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 HDAC11Q96DB2 347 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 ZDHHC12Q96GR4 267 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 HSD3B7Q9H2F3 369 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 TRIM39Q9HCM9 518 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 POT1Q9NUX5 634 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 POLHQ9Y253 713 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 PRKAB1Q9Y478 270 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 RPS6KL1Q9Y6S9 549 aa20.78■□□□□ 0.92
SQSTM1-210ENST00000506042 NKX2-8O15522 239 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 VEGFDO43915 354 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 UBXN7O94888 489 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 CYP1A2P05177 515 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 XRCC1P18887 633 aaPredicted RBP20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 DCDC1P59894 354 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 DPYSL3Q14195 570 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 SKIDA1Q1XH10 827 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 LRRTM4Q86VH4 590 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 TEX19Q8NA77 164 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 CTNNBL1Q8WYA6 563 aaPredicted RBP20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 CXorf40BQ96DE9 158 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 C9orf72Q96LT7 481 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 TTC25Q96NG3 672 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 AGAP2Q99490 1192 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 MAK16Q9BXY0 300 aaKnown RBP20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 GPR63Q9BZJ6 419 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 ZCCHC2Q9C0B9 1178 aaKnown RBP20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 KLC4Q9NSK0 619 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 CTTNBP2NLQ9P2B4 639 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 UVRAGQ9P2Y5 699 aa20.77■□□□□ 0.92
SQSTM1-210ENST00000506042 LOC101059948A0A1B0GTJ6 334 aa20.76■□□□□ 0.91
SQSTM1-210ENST00000506042 TPM3P06753 285 aa20.76■□□□□ 0.91
SQSTM1-210ENST00000506042 TCF4P15884 667 aa20.76■□□□□ 0.91
SQSTM1-210ENST00000506042 DLSTP36957 453 aa20.76■□□□□ 0.91
SQSTM1-210ENST00000506042 CD86P42081 329 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms