RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TBL1XO60907 577 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 ECI2O75521 394 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 S100BP04271 92 aaPredicted RBP11.89□□□□□ -0.51
NUP54-202ENST00000502850 UROSP10746 265 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 IRF1P10914 325 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 RPL17P18621 184 aaKnown RBP11.89□□□□□ -0.51
NUP54-202ENST00000502850 LAG3P18627 525 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 GPX3P22352 226 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 RFC2P35250 354 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 KCNC1P48547 511 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 AQP4P55087 323 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TWF1Q12792 350 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TRAF2Q12933 501 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 CDH18Q13634 790 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 RPS6KA2Q15349 733 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 PPP1R3AQ16821 1122 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 SFT2D3Q587I9 215 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 ZRANB3Q5FWF4 1079 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 ARMC12Q5T9G4 340 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 LPCAT4Q643R3 524 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 RNF111Q6ZNA4 994 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 ADAMTSL2Q86TH1 951 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 CARNMT1Q8N4J0 409 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 EFCAB3Q8N7B9 438 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 EFHBQ8N7U6 833 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 GOLM1Q8NBJ4 401 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 ZNF483Q8TF39 744 aaPredicted RBP11.89□□□□□ -0.51
NUP54-202ENST00000502850 DUS3LQ96G46 650 aaKnown RBP11.89□□□□□ -0.51
NUP54-202ENST00000502850 MYO19Q96H55 970 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 PDLIM5Q96HC4 596 aaKnown RBP11.89□□□□□ -0.51
NUP54-202ENST00000502850 GBP5Q96PP8 586 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 MUC13Q9H3R2 512 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 AKTIPQ9H8T0 292 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TNFRSF12AQ9NP84 129 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.89□□□□□ -0.51
NUP54-202ENST00000502850 TMEM181Q9P2C4 612 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 LHX3Q9UBR4 397 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 FKBPLQ9UIM3 349 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 RIMS3Q9UJD0 308 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 ZNF711Q9Y462 761 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 ASB3Q9Y575 518 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TNPO3Q9Y5L0 923 aaKnown RBP11.89□□□□□ -0.51
NUP54-202ENST00000502850 OBSL1O75147 1896 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 A0A0J9YYE9 177 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 BTN3A1O00481 513 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 DENRO43583 198 aaKnown RBP11.89□□□□□ -0.51
NUP54-202ENST00000502850 FZD6O60353 706 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TSPAN3O60637 253 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 SOCS5O75159 536 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 ESRRBO95718 433 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 LINGO3P0C6S8 592 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 VCLP18206 1134 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 RPS3P23396 243 aaKnown RBP eCLIP11.89□□□□□ -0.51
NUP54-202ENST00000502850 DPP6P42658 865 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 CSNK1DP48730 415 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 SGSHP51688 502 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 CDH13P55290 713 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 SMAD3P84022 425 aaKnown RBP11.89□□□□□ -0.51
NUP54-202ENST00000502850 RHDQ02161 417 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TLE2Q04725 743 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 BNIP2Q12982 314 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TSNQ15631 228 aaKnown RBP11.89□□□□□ -0.51
NUP54-202ENST00000502850 TCTN1Q2MV58 587 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 OR52E8Q6IFG1 317 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 C8orf82Q6P1X6 216 aaPredicted RBP11.89□□□□□ -0.51
NUP54-202ENST00000502850 C16orf59Q7L2K0 433 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 GPSM1Q86YR5 675 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TCEAL8Q8IYN2 117 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 HMGCLL1Q8TB92 370 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TRPC4APQ8TEL6 797 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 FUBP1Q96AE4 644 aaKnown RBP11.89□□□□□ -0.51
NUP54-202ENST00000502850 ACDQ96AP0 544 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TUBGCP3Q96CW5 907 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 LINGO1Q96FE5 620 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 DCUN1D1Q96GG9 259 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 SCLYQ96I15 445 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 TOX2Q96NM4 488 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 BIRC8Q96P09 236 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 CENPKQ9BS16 269 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 VN1R3Q9BXE9 311 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 GPR63Q9BZJ6 419 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 GKN1Q9NS71 199 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 MED16Q9Y2X0 877 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 PCDHGC4Q9Y5F7 938 aa11.89□□□□□ -0.51
NUP54-202ENST00000502850 DYTNA2CJ06 578 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 NPEPPSL1A6NEC2 478 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 E7ENX8 843 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 FBP2O00757 339 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 PRMT5O14744 637 aaPredicted RBP11.88□□□□□ -0.51
NUP54-202ENST00000502850 SIX3O95343 332 aaPredicted RBP11.88□□□□□ -0.51
NUP54-202ENST00000502850 OLFM2O95897 454 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 CAPNS1P04632 268 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 UBTFL6P0CB48 400 aaPredicted RBP11.88□□□□□ -0.51
NUP54-202ENST00000502850 ZNF7P17097 686 aaPredicted RBP11.88□□□□□ -0.51
NUP54-202ENST00000502850 CHRM3P20309 590 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 HMGCLP35914 325 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 RGS4P49798 205 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 SH3BGRP55822 239 aaPredicted RBP11.88□□□□□ -0.51
NUP54-202ENST00000502850 CRY1Q16526 586 aa11.88□□□□□ -0.51
NUP54-202ENST00000502850 LRRC36Q1X8D7 754 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms