RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PRKD1Q15139 912 aaPredicted RBP10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 IMPG1Q17R60 797 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PLEKHG4Q58EX7 1191 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MIER2Q8N344 545 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RIN3Q8TB24 985 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MAGEE2Q8TD90 523 aaPredicted RBP10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ITPKCQ96DU7 683 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DHRS1Q96LJ7 313 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 C9orf16Q9BUW7 83 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 C6orf62Q9GZU0 229 aaPredicted RBP10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 COQ10BQ9H8M1 238 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RPRD1BQ9NQG5 326 aaKnown RBP10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MTX2O75431 263 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RFPL2O75678 378 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 BPGMP07738 259 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DLDP09622 509 aaKnown RBP10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PSMB9P28065 219 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GRIA3P42263 894 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RPL26P61254 145 aaKnown RBP10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CAP1Q01518 475 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RAD51Q06609 339 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PKDCCQ504Y2 493 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TJAP1Q5JTD0 557 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 BRMS1LQ5PSV4 323 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PKN3Q6P5Z2 889 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ARCQ7LC44 396 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MILR1Q7Z6M3 343 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ADGRG6Q86SQ4 1221 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MARVELD2Q8N4S9 558 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PXYLP1Q8TE99 480 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 BBS2Q9BXC9 721 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 OR6C75A6NL08 312 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 K7ERQ8 282 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 GABRDO14764 452 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TSC22D2O75157 780 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 AHSGP02765 367 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TFAP2AP05549 437 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SEPHS1P49903 392 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 APLP1P51693 650 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZBED5Q49AG3 693 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FAAH2Q6GMR7 532 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FIBCD1Q8N539 461 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CLDN19Q8N6F1 224 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 S100ZQ8WXG8 99 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 KCTD13Q8WZ19 329 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NCLNQ969V3 563 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MLPHQ9BV36 600 aaPredicted RBP10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZNHIT2Q9UHR6 403 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TIMM22Q9Y584 194 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ATG2BQ96BY7 2078 aa10.69□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 MATN3O15232 486 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 DNAJA2O60884 412 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 WDR47O94967 919 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SIX3O95343 332 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 NADKO95544 446 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 UGT2B4P06133 528 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TPSB2P20231 275 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TUBA1BP68363 451 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TPSAB1Q15661 275 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PAOXQ6QHF9 649 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TMEM26Q6ZUK4 368 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TUBA1AQ71U36 451 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CDH24Q86UP0 819 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CMTM8Q8IZV2 173 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 LENG8Q96PV6 779 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ACOX2Q99424 681 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 VAT1Q99536 393 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RTKNQ9BST9 563 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CRISPLD1Q9H336 500 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 BRWD1Q9NSI6 2320 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 I6L893 689 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TOR1BO14657 336 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 INPP4BO15327 924 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TP73O15350 636 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PSMD3O43242 534 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ACSL4O60488 711 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZNF623O75123 536 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 TIPRLO75663 272 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PIK3R1P27986 724 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SLC5A2P31639 672 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ABCE1P61221 599 aaKnown RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 POU4F1Q01851 419 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 CTC1Q2NKJ3 1217 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ZIK1Q3SY52 487 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ARL13AQ5H913 290 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 BROXQ5VW32 411 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FAM219BQ5XKK7 198 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SLCO6A1Q86UG4 719 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 C7orf61Q8IZ16 206 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 OR8H2Q8N162 312 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FSTL5Q8N475 847 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PTGR2Q8N8N7 351 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FAM156AQ8NDB6 213 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 FBXO27Q8NI29 283 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 APBB2Q92870 758 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 ASB8Q9H765 288 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 OLA1Q9NTK5 396 aaKnown RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 SPG21Q9NZD8 308 aa10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 RABL2AQ9UBK7 228 aaPredicted RBP10.68□□□□□ -0.7
MSH5-SAPCD1-207ENST00000493662 PNMA8BQ9ULN7 279 aaPredicted RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms