RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 ST14Q9Y5Y6 855 aa13.11□□□□□ -0.31
HDAC3-213ENST00000492506 PRRC2CQ9Y520 2896 aaKnown RBP13.1□□□□□ -0.31
HDAC3-213ENST00000492506 BLACEA4D250 179 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 C2CD4BA6NLJ0 364 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 ZNF891A8MT65 544 aaPredicted RBP13.1□□□□□ -0.31
HDAC3-213ENST00000492506 CACNB4O00305 520 aaPredicted RBP13.1□□□□□ -0.31
HDAC3-213ENST00000492506 NKX2-8O15522 239 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 CREB3O43889 395 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 RECQL5O94762 991 aaPredicted RBP13.1□□□□□ -0.31
HDAC3-213ENST00000492506 CCNB1P14635 433 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 ALDH4A1P30038 563 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 CD151P48509 253 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 PPP2R2AP63151 447 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 CUL1Q13616 776 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 PPP1R7Q15435 360 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 ZRSR2Q15696 482 aaKnown RBP13.1□□□□□ -0.31
HDAC3-213ENST00000492506 C4orf17Q53FE4 359 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 HIBCHQ6NVY1 386 aaPredicted RBP13.1□□□□□ -0.31
HDAC3-213ENST00000492506 ERAP2Q6P179 960 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 BRAT1Q6PJG6 821 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 DNAAF5Q86Y56 855 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 CAMK1DQ8IU85 385 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 SPATA4Q8NEY3 305 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 JOSD2Q8TAC2 188 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 ART4Q93070 314 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 SLC45A3Q96JT2 553 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 CATSPER2Q96P56 530 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 FAM192AQ9GZU8 254 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 PDFQ9HBH1 243 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 RWDD2AQ9UIY3 292 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 PILRAQ9UKJ1 303 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 RPL26L1Q9UNX3 145 aaKnown RBP13.1□□□□□ -0.31
HDAC3-213ENST00000492506 PLAAQ9Y263 795 aa13.1□□□□□ -0.31
HDAC3-213ENST00000492506 LUC7L2Q9Y383 392 aaKnown RBP13.1□□□□□ -0.31
HDAC3-213ENST00000492506 CRYBG3Q68DQ2 2970 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 PRSS38A1L453 326 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 RASA4BC9J798 803 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 RASA4O43374 803 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 DUX1O43812 170 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 RAD1O60671 282 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 SMIM24O75264 130 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 ECEL1O95672 775 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 MMEP08473 750 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 THRAP10827 490 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 KELP23276 732 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 SDC4P31431 198 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 CSF2RBP32927 897 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 STAT1P42224 750 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 PTPN9P43378 593 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 RGRP47804 291 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 CD97P48960 835 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 COPB1P53618 953 aaKnown RBP13.09□□□□□ -0.31
HDAC3-213ENST00000492506 EIF3BP55884 814 aaKnown RBP13.09□□□□□ -0.31
HDAC3-213ENST00000492506 YBEYP58557 167 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-213ENST00000492506 CACNA1DQ01668 2161 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 GUCY1A3Q02108 690 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 SQSTM1Q13501 440 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 TRA2AQ13595 282 aaKnown RBP eCLIP13.09□□□□□ -0.31
HDAC3-213ENST00000492506 GRM3Q14832 879 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 SH2D4BQ5SQS7 431 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 NKAIN2Q5VXU1 208 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 AFMIDQ63HM1 303 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 LIPIQ6XZB0 460 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 STRADAQ7RTN6 431 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 CPLX4Q7Z7G2 160 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 ZNF354CQ86Y25 554 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 RP1L1Q8IWN7 2480 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-213ENST00000492506 PYROXD2Q8N2H3 581 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 BMPERQ8N8U9 685 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 TSEN2Q8NCE0 465 aaKnown RBP13.09□□□□□ -0.31
HDAC3-213ENST00000492506 OR4D9Q8NGE8 314 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 C9orf43Q8TAL5 461 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-213ENST00000492506 ZDHHC1Q8WTX9 485 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 PATE1Q8WXA2 126 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 NTAN1Q96AB6 310 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 MIB2Q96AX9 1013 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 ECHDC3Q96DC8 303 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 STAMBPL1Q96FJ0 436 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 THOC1Q96FV9 657 aaKnown RBP13.09□□□□□ -0.31
HDAC3-213ENST00000492506 TEP1Q99973 2627 aaKnown RBP13.09□□□□□ -0.31
HDAC3-213ENST00000492506 SAMSN1Q9NSI8 373 aaKnown RBP13.09□□□□□ -0.31
HDAC3-213ENST00000492506 OCIAD1Q9NX40 245 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 TMEM9Q9P0T7 183 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 CAPN11Q9UMQ6 739 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 GMEB1Q9Y692 573 aa13.09□□□□□ -0.31
HDAC3-213ENST00000492506 CELSR2Q9HCU4 2923 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 CREBBPQ92793 2442 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 RHPN2P1A8MT19 583 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 WASH4PA8MWX3 477 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 B4E171 279 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 CES2O00748 559 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 PPM1DO15297 605 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 TEX33O43247 280 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 MMP8P22894 467 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 MPSTP25325 297 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 EPHB2P29323 1055 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 TSPAN7P41732 249 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 SKIV2L2P42285 1042 aaKnown RBP13.08□□□□□ -0.32
HDAC3-213ENST00000492506 GPR3P46089 330 aa13.08□□□□□ -0.32
HDAC3-213ENST00000492506 C2orf54Q08AI8 447 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms