RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ALG1LQ6GMV1 187 aa15.16■□□□□ 0.02
MCF2L-228ENST00000487354 POLNQ7Z5Q5 900 aa15.16■□□□□ 0.02
MCF2L-228ENST00000487354 PLXDC1Q8IUK5 500 aa15.16■□□□□ 0.02
MCF2L-228ENST00000487354 ENOX1Q8TC92 643 aaKnown RBP15.16■□□□□ 0.02
MCF2L-228ENST00000487354 CT55Q8WUE5 264 aa15.16■□□□□ 0.02
MCF2L-228ENST00000487354 OR6C1Q96RD1 312 aa15.16■□□□□ 0.02
MCF2L-228ENST00000487354 AKIRIN1Q9H9L7 192 aaPredicted RBP15.16■□□□□ 0.02
MCF2L-228ENST00000487354 UCK1Q9HA47 277 aa15.16■□□□□ 0.02
MCF2L-228ENST00000487354 MLXIPLQ9NP71 852 aa15.16■□□□□ 0.02
MCF2L-228ENST00000487354 CNOT8Q9UFF9 292 aaKnown RBP15.16■□□□□ 0.02
MCF2L-228ENST00000487354 DACH1Q9UI36 760 aa15.16■□□□□ 0.02
MCF2L-228ENST00000487354 MAP4K5Q9Y4K4 846 aa15.16■□□□□ 0.02
MCF2L-228ENST00000487354 PCDHB3Q9Y5E6 796 aa15.16■□□□□ 0.02
MCF2L-228ENST00000487354 A1L4Q6 167 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 KIF1CO43896 1103 aaKnown RBP15.15■□□□□ 0.02
MCF2L-228ENST00000487354 PRPSAP2O60256 369 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 NUAK1O60285 661 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 SNX2O60749 519 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 VPS4BO75351 444 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 KATNA1O75449 491 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 CLDN7O95471 211 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 ASMTLO95671 621 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 RECKO95980 971 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 FGF5P12034 268 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 CLCNKAP51800 687 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 ZNF135P52742 658 aaPredicted RBP15.15■□□□□ 0.02
MCF2L-228ENST00000487354 DNASE1L3Q13609 305 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 SMTNL2Q2TAL5 461 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 ZNF787Q6DD87 383 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 TXNRD3NBQ6F5E7 133 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 TMEM26Q6ZUK4 368 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 IRF2BP2Q7Z5L9 587 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 ATPAF2Q8N5M1 289 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 RSC1A1Q92681 617 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 STAMBPL1Q96FJ0 436 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 ELMO2Q96JJ3 720 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 CSPG4P5Q96PW8 444 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 LYSMD1Q96S90 227 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 TDRD1Q9BXT4 1180 aaKnown RBP15.15■□□□□ 0.02
MCF2L-228ENST00000487354 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.15■□□□□ 0.02
MCF2L-228ENST00000487354 TWSG1Q9GZX9 223 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 BRD8Q9H0E9 1235 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 STN1Q9H668 368 aaKnown RBP15.15■□□□□ 0.02
MCF2L-228ENST00000487354 NT5MQ9NPB1 228 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 PARVAQ9NVD7 372 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 ZNF624Q9P2J8 865 aaPredicted RBP15.15■□□□□ 0.02
MCF2L-228ENST00000487354 VPS4AQ9UN37 437 aa15.15■□□□□ 0.02
MCF2L-228ENST00000487354 ANKRD17O75179 2603 aaKnown RBP15.14■□□□□ 0.01
MCF2L-228ENST00000487354 TTLL8A6PVC2 850 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 TMCO5BA8MYB1 307 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 TOX3O15405 576 aaPredicted RBP15.14■□□□□ 0.01
MCF2L-228ENST00000487354 SPAG6O75602 509 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 ATP1A3P13637 1013 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 TYRP1P17643 537 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 SEPHS1P49903 392 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 CDH6P55285 790 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 DSC2Q02487 901 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 IL11RAQ14626 422 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 FKBP15Q5T1M5 1219 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 ZNF648Q5T619 568 aaPredicted RBP15.14■□□□□ 0.01
MCF2L-228ENST00000487354 MARC1Q5VT66 337 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 PAPD7Q5XG87 772 aaKnown RBP15.14■□□□□ 0.01
MCF2L-228ENST00000487354 TMCO3Q6UWJ1 677 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 APTXQ7Z2E3 356 aaKnown RBP15.14■□□□□ 0.01
MCF2L-228ENST00000487354 PRSS42Q7Z5A4 293 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 RAVER1Q8IY67 606 aaKnown RBP15.14■□□□□ 0.01
MCF2L-228ENST00000487354 NEK11Q8NG66 645 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 EID2BQ96D98 161 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 TGM7Q96PF1 710 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 ACTL8Q9H568 366 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 ZWILCHQ9H900 591 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 RMI1Q9H9A7 625 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 LHX9Q9NQ69 397 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 DTLQ9NZJ0 730 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 ATXN10Q9UBB4 475 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 SLC23A2Q9UGH3 650 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 KCND3Q9UK17 655 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 CHKBQ9Y259 395 aa15.14■□□□□ 0.01
MCF2L-228ENST00000487354 LGALS16A8MUM7 142 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 H3BRJ5 948 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 GRID2O43424 1007 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 UBXN7O94888 489 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 CLDN1O95832 211 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 SLC2A4P14672 509 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 BRAFP15056 766 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 ZNF8P17098 575 aaPredicted RBP15.13■□□□□ 0.01
MCF2L-228ENST00000487354 DESP17661 470 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 XRCC1P18887 633 aaPredicted RBP15.13■□□□□ 0.01
MCF2L-228ENST00000487354 COL8A1P27658 744 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 GARSP41250 739 aaKnown RBP15.13■□□□□ 0.01
MCF2L-228ENST00000487354 SLC19A1P41440 591 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 CAPZBP47756 277 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 SPINT3P49223 89 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 PPP1CAP62136 330 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 RPS18P62269 152 aaKnown RBP15.13■□□□□ 0.01
MCF2L-228ENST00000487354 CHAF1BQ13112 559 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 IL10RAQ13651 578 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 BECN1Q14457 450 aa15.13■□□□□ 0.01
MCF2L-228ENST00000487354 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.13■□□□□ 0.01
MCF2L-228ENST00000487354 CT47A1Q5JQC4 288 aaPredicted RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms