RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PHF19Q5T6S3 580 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 KAZNQ674X7 775 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 C11orf63Q6NUN7 778 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 INO80CQ6PI98 192 aaPredicted RBP18.38■□□□□ 0.53
COL7A1-209ENST00000474432 CHST15Q7LFX5 561 aaPredicted RBP18.38■□□□□ 0.53
COL7A1-209ENST00000474432 ZNF761Q86XN6 746 aaPredicted RBP18.38■□□□□ 0.53
COL7A1-209ENST00000474432 CCDC170Q8IYT3 715 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 LSM14AQ8ND56 463 aaKnown RBP18.38■□□□□ 0.53
COL7A1-209ENST00000474432 TFB1MQ8WVM0 346 aaKnown RBP18.38■□□□□ 0.53
COL7A1-209ENST00000474432 TMEM159Q96B96 161 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 RMI1Q9H9A7 625 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 FOXJ2Q9P0K8 574 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 TMEM9Q9P0T7 183 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 KCNK6Q9Y257 313 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 SDK2Q58EX2 2172 aa18.38■□□□□ 0.53
COL7A1-209ENST00000474432 PRAMEF33A0A0G2JMD5 474 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 PRR19A6NJB7 356 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 PRAMEF10O60809 474 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 JMJD7P0C870 316 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 ACP5P13686 325 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 BPIP17213 487 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 NFKB1P19838 968 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 LIMK2P53671 638 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 SRSF6Q13247 344 aaKnown RBP18.37■□□□□ 0.53
COL7A1-209ENST00000474432 PEX6Q13608 980 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 KHDC1Q4VXA5 237 aaKnown RBP18.37■□□□□ 0.53
COL7A1-209ENST00000474432 ALS2CLQ60I27 953 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 IYDQ6PHW0 289 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 ADGRG6Q86SQ4 1221 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 JAMLQ86YT9 394 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 RCBTB1Q8NDN9 531 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 TTC9Q92623 222 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 USP7Q93009 1102 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 OXNAD1Q96HP4 312 aaPredicted RBP18.37■□□□□ 0.53
COL7A1-209ENST00000474432 CCDC74BQ96LY2 380 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 CMKLR1Q99788 373 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 SPATA16Q9BXB7 569 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 RBSNQ9H1K0 784 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 CARD9Q9H257 536 aa18.37■□□□□ 0.53
COL7A1-209ENST00000474432 REXO2Q9Y3B8 237 aaKnown RBP18.37■□□□□ 0.53
COL7A1-209ENST00000474432 GCN1Q92616 2671 aaKnown RBP18.36■□□□□ 0.53
COL7A1-209ENST00000474432 CHUKO15111 745 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 GRID2O43424 1007 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 ZRANB2O95218 330 aaKnown RBP eCLIP18.36■□□□□ 0.53
COL7A1-209ENST00000474432 FGF3P11487 239 aaPredicted RBP18.36■□□□□ 0.53
COL7A1-209ENST00000474432 ZNF75DP51815 510 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 WNT3AP56704 352 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 ODF2Q5BJF6 829 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 BZW1Q7L1Q6 419 aaKnown RBP18.36■□□□□ 0.53
COL7A1-209ENST00000474432 ZC3H18Q86VM9 953 aaKnown RBP18.36■□□□□ 0.53
COL7A1-209ENST00000474432 DTX1Q86Y01 620 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 RCOR2Q8IZ40 523 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 ZNF567Q8N184 647 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 TTC30BQ8N4P2 665 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 TRAM1L1Q8N609 369 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 OR4D9Q8NGE8 314 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 GLYATL1Q969I3 302 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 PMEPA1Q969W9 287 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 HAUS1Q96CS2 278 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 MRGPRX2Q96LB1 330 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 QKIQ96PU8 341 aaKnown RBP eCLIP18.36■□□□□ 0.53
COL7A1-209ENST00000474432 ZSCAN5AQ9BUG6 496 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 OR2AG1Q9H205 316 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 TRIM39Q9HCM9 518 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 PDP2Q9P2J9 529 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 SLC23A2Q9UGH3 650 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 DUSP10Q9Y6W6 482 aa18.36■□□□□ 0.53
COL7A1-209ENST00000474432 SOWAHDA6NJG2 315 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 HGSO14964 777 aaPredicted RBP18.35■□□□□ 0.53
COL7A1-209ENST00000474432 THRAP10827 490 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 MPSTP25325 297 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 CA5AP35218 305 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 CHRNA4P43681 627 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 CLCNKAP51800 687 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 MAPK10P53779 464 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 ZNF569Q5MCW4 686 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 BBS12Q6ZW61 710 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 ZFAND4Q86XD8 727 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 P3H4Q92791 437 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 PANX2Q96RD6 677 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 FCRL5Q96RD9 977 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 CCNL2Q96S94 520 aaPredicted RBP18.35■□□□□ 0.53
COL7A1-209ENST00000474432 GORASP1Q9BQQ3 440 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 GPR63Q9BZJ6 419 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 C10orf88Q9H8K7 445 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 SARS2Q9NP81 518 aaKnown RBP18.35■□□□□ 0.53
COL7A1-209ENST00000474432 KCNK4Q9NYG8 393 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 FAM153AQ9UHL3 310 aa18.35■□□□□ 0.53
COL7A1-209ENST00000474432 EPN1Q9Y6I3 576 aaPredicted RBP18.35■□□□□ 0.53
COL7A1-209ENST00000474432 HELZ2Q9BYK8 2649 aaKnown RBP18.35■□□□□ 0.53
COL7A1-209ENST00000474432 F5H423 210 aaPredicted RBP18.34■□□□□ 0.53
COL7A1-209ENST00000474432 ERVH48-1M5A8F1 160 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 SLC25A14O95258 325 aaPredicted RBP18.34■□□□□ 0.53
COL7A1-209ENST00000474432 NDUFA10O95299 355 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 EPOP01588 193 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 SLC4A1P02730 911 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 RHDQ02161 417 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 TRA2AQ13595 282 aaKnown RBP eCLIP18.34■□□□□ 0.53
COL7A1-209ENST00000474432 PPP2R5EQ16537 467 aa18.34■□□□□ 0.53
COL7A1-209ENST00000474432 SIRPB2Q5JXA9 342 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms