RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 A0A0J9YYE9 177 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 MTHFD1P11586 935 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 RIPK1Q13546 671 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 TECRLQ5HYJ1 363 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 KBTBD2Q8IY47 623 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 APBB2Q92870 758 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 DCUN1D1Q96GG9 259 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 VCXQ9H320 206 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 TREX1Q9NSU2 369 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 SDHDO14521 159 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 SH3BP5O60239 455 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 ME2P23368 584 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 NNMTP40261 264 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 RPL38P63173 70 aaKnown RBP13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 DSG1Q02413 1049 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 MTX3Q5HYI7 312 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 MANEALQ5VSG8 457 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 KDM1BQ8NB78 822 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 SPATA17Q96L03 361 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 C1orf74Q96LT6 269 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 AGRPO00253 132 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 SOD2P04179 222 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 CLTBP09497 229 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 CKMT2P17540 419 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 CST5P28325 142 aaPredicted RBP13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 MS4A2Q01362 244 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 MED21Q13503 144 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 GAREM2Q75VX8 874 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 CHST14Q8NCH0 376 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 KLK6Q92876 244 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 CNDP1Q96KN2 507 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 CIB1Q99828 191 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 VCX3BQ9H321 246 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 ASB1Q9Y576 335 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 HCFC2Q9Y5Z7 792 aa13.64□□□□□ -0.23
CCDC88A-211ENST00000471947 LUC7L3O95232 432 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 SERPIND1P05546 499 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 CAPN1P07384 714 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 ZNF37AP17032 561 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 HALP42357 657 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 MAGEA11P43364 429 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 ZXDBP98169 803 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 LMAN2Q12907 356 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 RABL3Q5HYI8 236 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 SPPL2CQ8IUH8 684 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 MYO1HQ8N1T3 1032 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 FBXW8Q8N3Y1 598 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 ZNF184Q99676 751 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 HPS4Q9NQG7 708 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 MTRRQ9UBK8 725 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 IKZF3Q9UKT9 509 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 COQ6Q9Y2Z9 468 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 LCHNA4D1U4 455 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 CAPN14A8MX76 684 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 GMNNO75496 209 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 HMGA1P17096 107 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 MAPKAPK2P49137 400 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 CCNG1P51959 295 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 STC1P52823 247 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 KCNK10P57789 538 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 IRF5Q13568 498 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 STARD3Q14849 445 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 LY6G5CQ5SRR4 150 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 TMTC4Q5T4D3 741 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 KRT80Q6KB66 452 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 AFTPHQ6ULP2 937 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 RNF175Q8N4F7 328 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 HJURPQ8NCD3 748 aaPredicted RBP13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 LPGAT1Q92604 370 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 PSKH2Q96QS6 385 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 MFSD1Q9H3U5 465 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 DNAJC28Q9NX36 388 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 VPS4AQ9UN37 437 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 NEU3Q9UQ49 428 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 DPPA5A6NC42 116 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 UBFD1O14562 309 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 GSTA4O15217 222 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 SEC22BO75396 215 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 CDK14O94921 469 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 PEX11BO96011 259 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 VIPR2P41587 438 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 GSSP48637 474 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 FAM189BP81408 668 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 CEACAM7Q14002 265 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 PGS1Q32NB8 556 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 TSSK3Q96PN8 268 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 C1QTNF1Q9BXJ1 281 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 CAAP1Q9H8G2 361 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 LNPEPQ9UIQ6 1025 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 CROTQ9UKG9 612 aa13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 MRPS23Q9Y3D9 190 aaKnown RBP13.63□□□□□ -0.23
CCDC88A-211ENST00000471947 CHD7Q9P2D1 2997 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 TRAV19A0A0A6YYK7 116 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 TMEM114B3SHH9 223 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 WASH3PC4AMC7 463 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 GNGT2O14610 69 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 PRMT5O14744 637 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 GLUD1P00367 558 aa13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 ABCB1P08183 1280 aaPredicted RBP13.62□□□□□ -0.23
CCDC88A-211ENST00000471947 FAM163BP0C2L3 166 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms