RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 RAD18Q9NS91 495 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 DDX56Q9NY93 547 aaKnown RBP16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 NFKBIL1Q9UBC1 381 aaPredicted RBP16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 TBC1D29Q9UFV1 150 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 INTUQ9ULD6 942 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 PCDHGA3Q9Y5H0 932 aa16.41■□□□□ 0.22
CCDC28B-204ENST00000469003 DUX1O43812 170 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 NUAK1O60285 661 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 ACP5P13686 325 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 SLC2A4P14672 509 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 CSTF2P33240 577 aaKnown RBP eCLIP16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 DCDC1P59894 354 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 HHEXQ03014 270 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 CDK18Q07002 472 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 TCEAL1Q15170 157 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 FAM182AQ5T1J6 154 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 IYDQ6PHW0 289 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 ZNF761Q86XN6 746 aaPredicted RBP16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 CCDC112Q8NEF3 446 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 SH3KBP1Q96B97 665 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 RNF25Q96BH1 459 aaPredicted RBP16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 HERPUD2Q9BSE4 406 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 SPATA16Q9BXB7 569 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 ZMYND15Q9H091 742 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 TSPY26PQ9H489 355 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 STN1Q9H668 368 aaKnown RBP16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 TMEM9Q9P0T7 183 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 PDP2Q9P2J9 529 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 ATXN10Q9UBB4 475 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 KCNK6Q9Y257 313 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 SDK2Q58EX2 2172 aa16.4■□□□□ 0.22
CCDC28B-204ENST00000469003 A6NCN8 305 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 GPR89AB7ZAQ6 455 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 STMND1H3BQB6 276 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 GRID2O43424 1007 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 PIRTP0C851 137 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 GPR89BP0CG08 455 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 MPSTP25325 297 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 CLCNKAP51800 687 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 PCSK7Q16549 785 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 TEX44Q53QW1 395 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 ZNF569Q5MCW4 686 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 ALS2CLQ60I27 953 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 PDPK2PQ6A1A2 396 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 MFSD7Q6UXD7 560 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 KDELC2Q7Z4H8 507 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 TMC3Q7Z5M5 1100 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 SLC9B2Q86UD5 537 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 VASH2Q86V25 355 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 CNGA4Q8IV77 575 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 GPR26Q8NDV2 337 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 ZSCAN5AQ9BUG6 496 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 DDA1Q9BW61 102 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 CLMPQ9H6B4 373 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 GLOD4Q9HC38 313 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 SHOC2Q9UQ13 582 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 ZNF711Q9Y462 761 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 HYOU1Q9Y4L1 999 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 PCDHGA4Q9Y5G9 962 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 ADGRG1Q9Y653 693 aa16.39■□□□□ 0.21
CCDC28B-204ENST00000469003 KIR2DS5A0A0G2JLQ3 304 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 A0A0G2JNG1 304 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 OR5K4A6NMS3 321 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 B4E171 279 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 KIR2DS3K7RE56 304 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 SPOPO43791 374 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 SNX2O60749 519 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 SLC25A14O95258 325 aaPredicted RBP16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 NDST3O95803 873 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 ITGB2P05107 769 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 F3P13726 295 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 TNNT1P13805 278 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 ZNF8P17098 575 aaPredicted RBP16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 COMTP21964 271 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 TSPAN7P41732 249 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 NR2C2P49116 596 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 PPM1FP49593 454 aaPredicted RBP16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 ARSDP51689 593 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 DYNLT1P63172 113 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 TFDP2Q14188 446 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 KIR2DS5Q14953 304 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 TAZQ16635 292 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 WDR74Q6RFH5 385 aaPredicted RBP16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 XKR5Q6UX68 686 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 B4GALNT4Q76KP1 1039 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 BZW1Q7L1Q6 419 aaKnown RBP16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 PHYKPLQ8IUZ5 450 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 TRAM1L1Q8N609 369 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 ZSCAN1Q8NBB4 408 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 AVL9Q8NBF6 648 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 SPATA22Q8NHS9 363 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 ART4Q93070 314 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 GLYATL1Q969I3 302 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 PMEPA1Q969W9 287 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 SRPK1Q96SB4 655 aaKnown RBP16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 GPR63Q9BZJ6 419 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 OR2AG1Q9H205 316 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 TRIM39Q9HCM9 518 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 ARFGAP3Q9NP61 516 aa16.38■□□□□ 0.21
CCDC28B-204ENST00000469003 SLC39A1Q9NY26 324 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms