RNA–Protein interactions for RNA: ENST00000467326.5

VPS50-209, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-209ENST00000467326 ICAM5Q9UMF0 924 aa3.79□□□□□ -1.8
VPS50-209ENST00000467326 CDC14AQ9UNH5 594 aa3.79□□□□□ -1.8
VPS50-209ENST00000467326 SMC3Q9UQE7 1217 aa3.79□□□□□ -1.8
VPS50-209ENST00000467326 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.79□□□□□ -1.8
VPS50-209ENST00000467326 TEX13CA0A0J9YWL9 993 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 CPED1A4D0V7 1026 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 TNPO2O14787 897 aaKnown RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 VILLO15195 856 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 IPO8O15397 1037 aaKnown RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 ZIC3O60481 467 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 LDB3O75112 727 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 CCNDBP1O95273 360 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 HEXAP06865 529 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 SNRNP70P08621 437 aaKnown RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 LAMP2P13473 410 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 ETFAP13804 333 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 KRTAP5-9P26371 169 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 HSPA4P34932 840 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 KRT2P35908 639 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 EIF2DP41214 584 aaKnown RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 SSR1P43307 286 aaKnown RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 CTCFP49711 727 aaPredicted RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 POLR2FP61218 127 aaKnown RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 RPP30P78346 268 aaKnown RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 ECT2LQ008S8 904 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 IL1RL1Q01638 556 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 YWHAHQ04917 246 aaPredicted RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 GRIK3Q13003 919 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 MRPL28Q13084 256 aaKnown RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 CYP20A1Q6UW02 462 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 PET117Q6UWS5 81 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 DLK2Q6UY11 383 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 NOXA1Q86UR1 476 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 NBPF5PQ86XG9 351 aaPredicted RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 CEP97Q8IW35 865 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 RNF168Q8IYW5 571 aaPredicted RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 C17orf53Q8N3J3 647 aaPredicted RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 TTC39CQ8N584 583 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 SCCPDHQ8NBX0 429 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 DEPDC1BQ8WUY9 529 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 ANP32BQ92688 251 aaKnown RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 ATP6V0A1Q93050 837 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 EXOC4Q96A65 974 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 C16orf45Q96MC5 204 aaPredicted RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 RAB3IPQ96QF0 476 aaPredicted RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 LBHD1Q9BQE6 289 aaPredicted RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 FUZQ9BT04 418 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 ACAT2Q9BWD1 397 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 HEMGNQ9BXL5 484 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 NOX4Q9NPH5 578 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 PFDN4Q9NQP4 134 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 TRMT1Q9NXH9 659 aaKnown RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 TAB2Q9NYJ8 693 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 SLC25A10Q9UBX3 287 aaPredicted RBP3.78□□□□□ -1.8
VPS50-209ENST00000467326 SLC9A2Q9UBY0 812 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 HSPB7Q9UBY9 170 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 SLCO3A1Q9UIG8 710 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 ANAPC5Q9UJX4 755 aa3.78□□□□□ -1.8
VPS50-209ENST00000467326 TMEM110-MUSTN1A8MSY1 372 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 NPIPB11E5RHQ5 1161 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 UBE2CO00762 179 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 WDR46O15213 610 aaKnown RBP3.77□□□□□ -1.81
VPS50-209ENST00000467326 ZBTB14O43829 449 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 IFNAR1P17181 557 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 ABCD3P28288 659 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 DLG1Q12959 904 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 NEDD9Q14511 834 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 PPA1Q15181 289 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 EFNB3Q15768 340 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 ADIPOQQ15848 244 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 KYNUQ16719 465 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 HIST2H2ACQ16777 129 aaPredicted RBP3.77□□□□□ -1.81
VPS50-209ENST00000467326 TCTN1Q2MV58 587 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 ZNF718Q3SXZ3 478 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 ANKDD1AQ495B1 522 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 DUSP28Q4G0W2 176 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 ATP13A5Q4VNC0 1218 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 WBP2NLQ6ICG8 309 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 KRTAP5-4Q6L8H1 288 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 KDELC1Q6UW63 502 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 SZRD1Q7Z422 152 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 PXKQ7Z7A4 578 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 METTL23Q86XA0 190 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 POMGNT2Q8NAT1 580 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 FBXO30Q8TB52 745 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 ETNPPLQ8TBG4 499 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 ZCCHC10Q8TBK6 192 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 CDCA5Q96FF9 252 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 SCMH1Q96GD3 660 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 IL17FQ96PD4 163 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 ZNF385AQ96PM9 386 aaKnown RBP3.77□□□□□ -1.81
VPS50-209ENST00000467326 ITPAQ9BY32 194 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 SMARCAD1Q9H4L7 1026 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 COPS7BQ9H9Q2 264 aaPredicted RBP3.77□□□□□ -1.81
VPS50-209ENST00000467326 BPIFA1Q9NP55 256 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 DDX4Q9NQI0 724 aaKnown RBP3.77□□□□□ -1.81
VPS50-209ENST00000467326 UBA2Q9UBT2 640 aaPredicted RBP3.77□□□□□ -1.81
VPS50-209ENST00000467326 KCNG2Q9UJ96 466 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 FAM96BQ9Y3D0 163 aa3.77□□□□□ -1.81
VPS50-209ENST00000467326 NFE2L3Q9Y4A8 694 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms