RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 HPS4Q9NQG7 708 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 SPO11Q9Y5K1 396 aa11.65□□□□□ -0.55
CPSF3-202ENST00000460593 YJEFN3A6XGL0 299 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 SNPHO15079 494 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 MITFO75030 526 aaPredicted RBP11.64□□□□□ -0.55
CPSF3-202ENST00000460593 FCGR1AP12314 374 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 IMPDH1P20839 514 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 AKAP5P24588 427 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 PSMB9P28065 219 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 ICAM3P32942 547 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 TAF2Q6P1X5 1199 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 TAS2R42Q7RTR8 314 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 FAM83AQ86UY5 434 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 DCP1BQ8IZD4 617 aaKnown RBP11.64□□□□□ -0.55
CPSF3-202ENST00000460593 DTWD1Q8N5C7 304 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 PNPT1Q8TCS8 783 aaKnown RBP11.64□□□□□ -0.55
CPSF3-202ENST00000460593 SPATA33Q96N06 139 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 NODALQ96S42 347 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 NPY6RQ99463 290 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 RNF38Q9H0F5 515 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 DDIT4Q9NX09 232 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 GMIPQ9P107 970 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 ZNF646O15015 1829 aaPredicted RBP11.64□□□□□ -0.55
CPSF3-202ENST00000460593 A0A087X1B8 175 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 TNPO2O14787 897 aaKnown RBP11.64□□□□□ -0.55
CPSF3-202ENST00000460593 HS6ST1O60243 411 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 SNX2O60749 519 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 SEC24AO95486 1093 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 GOT2P00505 430 aaKnown RBP11.64□□□□□ -0.55
CPSF3-202ENST00000460593 FYNP06241 537 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 ACADSBP45954 432 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 MAP3K7CLP57077 242 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 TUBA3CQ13748 450 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 HECTD2Q5U5R9 776 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 BLOC1S3Q6QNY0 202 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 TFAP2DQ7Z6R9 452 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 ZDHHC17Q8IUH5 632 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 CLYBLQ8N0X4 340 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 C2CD4AQ8NCU7 369 aaPredicted RBP11.64□□□□□ -0.55
CPSF3-202ENST00000460593 PPHLN1Q8NEY8 458 aaKnown RBP11.64□□□□□ -0.55
CPSF3-202ENST00000460593 OR6P1Q8NGX9 317 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 FIG4Q92562 907 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 ZNF486Q96H40 463 aaPredicted RBP11.64□□□□□ -0.55
CPSF3-202ENST00000460593 CNDP2Q96KP4 475 aaKnown RBP11.64□□□□□ -0.55
CPSF3-202ENST00000460593 NSMCE2Q96MF7 247 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 SLC52A3Q9NQ40 469 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.64□□□□□ -0.55
CPSF3-202ENST00000460593 KCTD3Q9Y597 815 aa11.64□□□□□ -0.55
CPSF3-202ENST00000460593 AZIN1O14977 448 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 KRT75O95678 551 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 PCMT1P22061 227 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 IL12AP29459 219 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 ARL1P40616 181 aaPredicted RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 SMN1Q16637 294 aaKnown RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 CELF3Q5SZQ8 465 aaKnown RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 LAIR1Q6GTX8 287 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 METTL7BQ6UX53 244 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 TMEM179BQ7Z7N9 219 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 ISCA2Q86U28 154 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 ARMC8Q8IUR7 673 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 FBXO16Q8IX29 292 aaPredicted RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 OR6Q1Q8NGQ2 317 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 OSCP1Q8WVF1 389 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 FAR1Q8WVX9 515 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 WNT8BQ93098 351 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 CGREF1Q99674 301 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 MYOCQ99972 504 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 BTBD2Q9BX70 525 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 IL37Q9NZH6 218 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 MARCH4Q9P2E8 410 aaPredicted RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 GPSM3Q9Y4H4 160 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 SYCE1LA8MT33 242 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 BBIP1A8MTZ0 92 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 ZNF99A8MXY4 864 aaPredicted RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 H0YAE9 185 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 SLC1A7O00341 560 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 SOAT2O75908 522 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 FADS2O95864 444 aaKnown RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 KCNK10P57789 538 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 IL5RAQ01344 420 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 FAM214AQ32MH5 1076 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 GPRIN1Q7Z2K8 1008 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 CELF2-AS1Q8N7Q2 184 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 BPIFB1Q8TDL5 484 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 YTHDF1Q9BYJ9 559 aaKnown RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 PLEKHA5Q9HAU0 1116 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 PRMT7Q9NVM4 692 aaPredicted RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 RCOR3Q9P2K3 495 aaPredicted RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 ZNF639Q9UID6 485 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 ERI2A8K979 691 aaKnown RBP11.63□□□□□ -0.55
CPSF3-202ENST00000460593 TTC34A8MYJ7 566 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 G3V2T6 193 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 PRSS23O95084 383 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 FTH1P02794 183 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 ALOX5P09917 674 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 DGKQP52824 942 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 POU4F1Q01851 419 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 DESI1Q6ICB0 168 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 PRMT9Q6P2P2 845 aa11.63□□□□□ -0.55
CPSF3-202ENST00000460593 RIMKLAQ8IXN7 391 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms